Hg_chrom6_TN10mRNA_12858
Organism: Heterodera glycines Gene Locus: chr6:10152935-10156124 Feature type: polypeptideProtein Sequence
Length: 309
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.091 | 1.054 | 0.706 | 0.67 | 0.917 | 1.162 | 0.848 | 1.942 | 1.51 | 1.225 | 0.637 | 0.761 | 1.348 | 1.182 | 1.783 | 0.601 | 1.167 | 0.785 | 0.747 | 0.19 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12109
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRGRRGRSAR
|
14-37
|
0.945
|
— | — | — | — |
0.000
|
— | — |
0.633
|
0.226
|
0.083
|
0.596
|
0.052
|
0.016
|
0.067
|
0.111
|
0.072
|
0.080
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004458
|
2.000
|
1.000
|
Hsc_gene_12015.t1
|
Hsc_gene_12015.t1
|
— | — |
KAH7719368.1 Cytidine and deoxycytidylate deaminase zinc-binding region family protein [Aphelenchus avenae]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.875|GO:0110165_0.869|GO:0005622_0.789|GO:0016020_0.760|GO:0043226_0.732|GO:0043229_0.721|GO:0043227_0.688|GO:0043231_0.684|GO:0005634_0.599|GO:0031974_0.581|GO:0043233_0.581|GO:0070013_0.581|GO:0031981_0.568|GO:0005654_0.558
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-11
|
1.000
|
12-309
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.822
|
34399.490
|
10.239
|
17.000
|
26.214
|
10.356
|
46.602
|
53.398
|
16.828
|
9.385
|
49.515
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
darkturquoise
|
346.016
|
409.246
|
389.998
|
367.308
|
425.345
|
347.303
|
361.589
|
263.541
|
269.237
|
350.271
|
315.542
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.299
|
-0.293
|
— |
0.180
|
-0.278
|
— |
-0.502
|
0.597
|
— | — | — | — | — |
No JSON data available for plots.