Hg_chrom6_TN10mRNA_12860
Organism: Heterodera glycines Gene Locus: chr6:10160207-10166817 Feature type: polypeptideProtein Sequence
Length: 507
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.55 | 1.009 | 0.825 | 0.816 | 0.789 | 0.556 | 0.611 | 1.282 | 1.753 | 1.466 | 0.807 | 1.276 | 2.904 | 0.759 | 0.805 | 0.986 | 0.711 | 1.255 | 1.365 | 1.044 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12110
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.138
|
0.193
|
0.095
|
0.213
|
0.691
|
0.399
|
0.643
|
0.051
|
0.281
|
0.166
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001376
|
4.000
|
1.000
|
Hsc_gene_12014.t1
|
Hsc_gene_12014.t1
|
— |
A8XAC4.1 Beta-1,4-mannosyltransferase bre-3 [Caenorhabditis briggsae]
|
KAI1731818.1 glycosyl transferase family group 2 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0019187
|
GO:0008150_0.947|GO:0008152_0.760|GO:0044238_0.740|GO:0009058_0.732|GO:0005575_0.654|GO:0110165_0.654|GO:0005622_0.536|GO:0005737_0.536|GO:0009987_0.530|GO:0003674_0.511
|
IPR001173+234-445+|IPR027389+50-500+|IPR029044+201-424+
|
— |
PF13632+234-445+Glycosyl_transferase_family_group_2
|
G3DSA:3.90.550.10:FF:000175+150-359+Beta-1,4-mannosyltransferase_bre-3
|
PTHR16779+50-500+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-507
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.631
|
58462.400
|
7.418
|
6.500
|
21.105
|
18.343
|
38.856
|
61.144
|
11.834
|
9.270
|
44.576
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
968.581
|
902.595
|
506.234
|
373.434
|
417.699
|
754.447
|
804.847
|
1078.064
|
167.166
|
2298.170
|
1384.883
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.063
|
-1.410
|
-0.331
|
— |
0.867
|
— | — | — |
-3.893
|
— | — | — | — |
No JSON data available for plots.