Hg_chrom6_TN10mRNA_12866
Organism: Heterodera glycines Gene Locus: chr6:10195015-10196781 Feature type: polypeptideProtein Sequence
Length: 166
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.49 | 0.7 | 0.657 | 0.415 | 0.502 | 0.618 | 0.502 | 1.205 | 1.74 | 1.384 | 0.73 | 2.126 | 3.347 | 0.927 | 0.984 | 0.861 | 0.691 | 1.46 | 2.317 | 1.417 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12115
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum|golgi_apparatus
|
— | — |
28-48
|
0.990
|
— | — | — | — |
0.000
|
— | — |
0.166
|
0.286
|
0.078
|
0.328
|
0.766
|
0.543
|
0.674
|
0.014
|
0.225
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001376
|
4.000
|
1.000
|
Hsc_gene_12014.t1
|
Hsc_gene_12014.t1
|
— |
Q03562.2 Beta-1,4-mannosyltransferase bre-3 [Caenorhabditis elegans]
|
KAI1725323.1 glycosyl transferase family group 2 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0019187
|
GO:0008150_0.929|GO:0008152_0.748|GO:0044238_0.727|GO:0009058_0.723|GO:0005575_0.655|GO:0110165_0.655|GO:0005622_0.565|GO:0005737_0.565
|
IPR001173+2-104+|IPR027389+1-159+
|
— |
PF13632+2-104+Glycosyl_transferase_family_group_2
|
— |
PTHR16779+1-159+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-166
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.745
|
19667.330
|
9.546
|
7.000
|
18.675
|
22.289
|
34.337
|
65.663
|
12.048
|
6.627
|
40.964
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
43.721
|
47.309
|
21.940
|
18.990
|
16.575
|
27.054
|
89.482
|
141.783
|
1.028
|
54.331
|
31.487
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.343
|
-1.454
|
— | — |
0.718
|
1.735
|
2.294
|
— | — |
4.108
|
— | — | — |
No JSON data available for plots.