Hg_chrom6_TN10mRNA_12868
Organism: Heterodera glycines Gene Locus: chr6:10200119-10201804 Feature type: polypeptideProtein Sequence
Length: 138
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.758 | 1.011 | 0.922 | 1.999 | 0.725 | 0.557 | 0.776 | 1.087 | 0.805 | 1.371 | 0.329 | 1.705 | 1.409 | 1.394 | 2.958 | 1.346 | 0.594 | 0.549 | 0.557 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12117
|
— | — |
1.111
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — | — | — |
13-38
|
0.996
|
— | — |
0.000
|
— | — |
0.420
|
0.459
|
0.024
|
0.406
|
0.120
|
0.038
|
0.063
|
0.047
|
0.058
|
0.499
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
KAK6101493.1 N-terminal domain of galactosyltransferase family protein [Brugia pahangi]
|
No
|
0.240
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.925|GO:0005575_0.897|GO:0065007_0.894|GO:0050789_0.891|GO:0110165_0.888|GO:0009987_0.878|GO:0050794_0.878|GO:0003674_0.816|GO:0050896_0.813|GO:0032501_0.807|GO:0051716_0.796|GO:0008152_0.787|GO:0043170_0.787|GO:0016020_0.785|GO:0048518_0.782|GO:0032502_0.773|GO:0048856_0.771|GO:0009058_0.770|GO:0009059_0.770|GO:0044237_0.770|GO:0044249_0.770|GO:0007275_0.764|GO:0048522_0.760|GO:0044238_0.758|GO:0048731_0.742|GO:0030154_0.736|GO:0048869_0.736|GO:0071840_0.728|GO:0016043_0.726|GO:0019538_0.726|GO:0006950_0.725|GO:0048583_0.720|GO:0048468_0.714|GO:0048513_0.713|GO:0050793_0.706|GO:0009888_0.701|GO:0009653_0.698|GO:0007399_0.697|GO:0022414_0.697|GO:0048584_0.692|GO:0009605_0.691|GO:0022008_0.691|GO:0033554_0.688|GO:0048699_0.688|GO:0051128_0.688|GO:0009790_0.687|GO:0051094_0.687|GO:0030182_0.686|GO:0080134_0.685|GO:0048609_0.684|GO:0060429_0.683|GO:0009791_0.681|GO:0031099_0.681|GO:0009611_0.680|GO:0022603_0.680|GO:0030030_0.680|GO:0048666_0.680|GO:0051130_0.679|GO:0120036_0.679|GO:1901135_0.679|GO:0009792_0.678|GO:0048729_0.678|GO:0002009_0.677|GO:0007610_0.677|GO:0032101_0.677|GO:0032103_0.677|GO:0000902_0.676|GO:0031175_0.676|GO:0031344_0.676|GO:0120035_0.676|GO:0003824_0.674|GO:0009100_0.674|GO:0010975_0.674|GO:0019098_0.674|GO:1901137_0.674|GO:0022604_0.673|GO:0002119_0.670|GO:0002164_0.670|GO:0006022_0.670|GO:0006023_0.670|GO:0006024_0.670|GO:0006029_0.670|GO:0006790_0.670|GO:0009101_0.670|GO:0010976_0.670|GO:0015012_0.670|GO:0018991_0.670|GO:0030166_0.670|GO:0030203_0.670|GO:0030204_0.670|GO:0030206_0.670|GO:0031102_0.670|GO:0031103_0.670|GO:0031346_0.670|GO:0040025_0.670|GO:0044272_0.670|GO:0048678_0.670|GO:0048679_0.670|GO:0048680_0.670|GO:0050650_0.670|GO:0050654_0.670|GO:0061564_0.670|GO:0070570_0.670|GO:0070572_0.670|GO:0080135_0.670|GO:1903034_0.670|GO:1903036_0.670|GO:1903510_0.670|GO:0016740_0.667|GO:0008378_0.650|GO:0016757_0.650|GO:0016758_0.650
|
IPR029044+27-120+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
104-138
|
1.000
|
1-103
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.783
|
15560.950
|
10.444
|
11.500
|
28.261
|
7.971
|
47.826
|
52.174
|
18.841
|
9.420
|
52.174
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
magenta
|
43.979
|
43.079
|
74.715
|
50.443
|
59.319
|
72.655
|
38.842
|
71.728
|
15.896
|
26.445
|
21.924
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.564
|
— |
-0.457
|
— | — |
-0.894
|
— |
-0.744
|
— | — | — | — | — |
No JSON data available for plots.