Hg_chrom6_TN10mRNA_12871
Organism: Heterodera glycines Gene Locus: chr6:10221908-10225602 Feature type: polypeptideProtein Sequence
Length: 164
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.773 | 0.142 | 0.443 | 0.631 | 0.305 | 0.625 | 1.887 | 0.0 | 1.897 | 1.401 | 0.185 | 2.869 | 1.186 | 0.586 | 0.622 | 1.132 | 0.5 | 1.478 | 0.0 | 1.076 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12120
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — |
22-56
|
0.968
|
— | — |
0.000
|
— | — |
0.138
|
0.180
|
0.036
|
0.385
|
0.213
|
0.346
|
0.194
|
0.133
|
0.350
|
0.089
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010847
|
1.000
|
1.000
|
Hsc_gene_12002.t1
|
Hsc_gene_12002.t1
|
— |
Q21898.1 V-type proton ATPase 16 kDa proteolipid subunit c 1 [Caenorhabditis elegans]
|
KAF7639506.1 V-type proton ATPase proteolipid subunit [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0015078|GO:0033177|GO:0033179|GO:0046961|GO:1902600
|
GO:0005575_0.841|GO:0110165_0.828|GO:0016020_0.790|GO:0008150_0.756|GO:0005622_0.682|GO:0005737_0.682|GO:0009987_0.633|GO:0043226_0.565|GO:0043227_0.564|GO:0043229_0.554|GO:0043231_0.554|GO:0005773_0.546|GO:0071944_0.512|GO:0006810_0.505|GO:0051179_0.505|GO:0051234_0.505|GO:0055085_0.505
|
IPR000245+36-60_62-86_113-139_140-163+|IPR002379+23-82_102-161+|IPR011555+19-127+|IPR035921+17-164_21-83_94-162+
|
— |
PF00137+23-82_102-161+ATP_synthase_subunit_C
|
G3DSA:1.20.120.610:FF:000001+17-164+V-type_proton_ATPase_proteolipid_subunit
|
PTHR10263+13-163+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-164
|
9brz_o
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.840
|
16375.390
|
6.129
|
0.000
|
8.537
|
7.927
|
22.561
|
77.439
|
4.268
|
4.268
|
59.756
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
brown
|
2560.999
|
2369.782
|
4176.287
|
3030.960
|
3925.820
|
4055.756
|
2269.377
|
4398.221
|
1196.842
|
1221.915
|
1211.169
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.589
|
0.218
|
-0.354
|
0.341
|
— |
-0.828
|
— |
-0.813
|
— | — |
1.862
|
— | — |
No JSON data available for plots.