Hg_chrom6_TN10mRNA_12872
Organism: Heterodera glycines Gene Locus: chr6:10228586-10230512 Feature type: polypeptideProtein Sequence
Length: 217
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.232 | 0.429 | 0.754 | 0.318 | 1.152 | 1.182 | 0.658 | 1.613 | 0.819 | 1.245 | 0.419 | 1.898 | 2.304 | 0.886 | 1.035 | 1.119 | 0.68 | 1.536 | 1.063 | 0.542 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12121
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.001
|
— | — |
0.430
|
0.293
|
0.036
|
0.682
|
0.247
|
0.134
|
0.216
|
0.006
|
0.033
|
0.198
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003485
|
2.000
|
1.000
|
Hsc_gene_16728.t1
|
Hsc_gene_16728.t1
|
— |
Q6DC04.1 Histone-arginine methyltransferase CARM1 [Danio rerio]
|
KAI1718379.1 ribosomal protein l11 methyltransferase (PrmA) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016274|GO:0018216
|
GO:0008150_0.879|GO:0009987_0.781|GO:0003674_0.754|GO:0005575_0.678|GO:0003824_0.661|GO:0110165_0.644|GO:0008152_0.608|GO:0016740_0.592|GO:0065007_0.582|GO:0050789_0.573|GO:0044238_0.572|GO:0008168_0.559|GO:0016741_0.559|GO:0005622_0.551|GO:0071840_0.546|GO:0016043_0.544|GO:0043170_0.536|GO:0008170_0.535|GO:0140096_0.528|GO:0016020_0.526|GO:0050794_0.523|GO:0008757_0.519|GO:0016273_0.515|GO:0008276_0.513
|
IPR025799+1-217_25-215+|IPR029063+18-123_24-171+|IPR041698+25-119+
|
— |
PF13649+25-119+Methyltransferase_domain
|
— |
PTHR11006+25-215+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-217
|
6izq_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.620
|
24190.770
|
5.551
|
-3.500
|
22.120
|
14.747
|
40.553
|
59.447
|
11.060
|
11.060
|
49.770
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
114.449
|
64.764
|
72.980
|
82.505
|
99.048
|
73.205
|
149.641
|
51.381
|
6.876
|
272.988
|
158.940
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
-0.421
|
1.041
|
-0.612
|
1.683
|
-5.473
|
— | — | — |
8.280
|
No JSON data available for plots.