Hg_chrom6_TN10mRNA_12875
Organism: Heterodera glycines Gene Locus: chr6:10235909-10239421 Feature type: polypeptideProtein Sequence
Length: 441
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.055 | 1.002 | 0.783 | 0.391 | 1.55 | 2.035 | 1.377 | 1.134 | 0.756 | 0.46 | 1.409 | 1.334 | 0.756 | 0.611 | 1.481 | 1.037 | 0.929 | 0.653 | 0.349 | 0.267 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12123
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
ERKRKNSKQGGGER,KKGLKAKLDQGGGDTAKRR
|
32-56
|
0.990
|
52-74
|
0.999
|
— | — |
0.043
|
— | — |
0.429
|
0.110
|
0.026
|
0.544
|
0.097
|
0.040
|
0.092
|
0.007
|
0.254
|
0.142
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002356
|
2.000
|
2.000
|
Hsc_gene_11998.t1;Hsc_gene_19427.t1
|
Hsc_gene_11998.t1;Hsc_gene_19388.t1;Hsc_gene_19428.t1
|
— |
P34549.3 Uncharacterized protein R10E11.5 [Caenorhabditis elegans]
|
XP_045094173.1 Protein CBG09998 [Caenorhabditis briggsae];CAP29517.2 Protein CBG09998 [Caenorhabditis briggsae]
|
No
|
0.250
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
137-441
|
1.000
|
1-136
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.924
|
48099.260
|
9.977
|
18.000
|
32.426
|
6.349
|
57.596
|
42.404
|
18.821
|
13.605
|
50.794
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
246.816
|
312.572
|
754.852
|
326.384
|
106.983
|
79.541
|
20.088
|
376.623
|
36.345
|
311.169
|
193.387
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.042
|
— |
-1.101
|
-1.642
|
-0.413
|
-1.975
|
2.145
|
-4.088
|
— | — | — | — | — |
No JSON data available for plots.