Hg_chrom6_TN10mRNA_12904
Organism: Heterodera glycines Gene Locus: chr6:10402778-10405272 Feature type: polypeptideProtein Sequence
Length: 381
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.946 | 1.099 | 0.382 | 1.539 | 0.656 | 1.144 | 0.875 | 1.706 | 1.225 | 0.958 | 0.636 | 1.544 | 0.875 | 1.312 | 1.875 | 0.75 | 1.119 | 1.074 | 1.211 | 0.618 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12152
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
63-92
|
0.901
|
18-66
|
0.993
|
— | — |
0.000
|
— | — |
0.068
|
0.962
|
0.012
|
0.291
|
0.124
|
0.015
|
0.050
|
0.045
|
0.050
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002357
|
3.000
|
1.000
|
Hsc_gene_22330.t1
|
— | — | — |
KAF7639337.1 Ribosomal_L2_C domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.875|GO:0110165_0.855|GO:0005622_0.761|GO:0016020_0.755|GO:0043226_0.712|GO:0043229_0.702|GO:0005737_0.686|GO:0043227_0.680|GO:0043231_0.667|GO:0003674_0.589|GO:0031090_0.562|GO:0005739_0.553|GO:0031967_0.551|GO:0005740_0.545|GO:0005743_0.545|GO:0019866_0.545|GO:0031966_0.545
|
IPR002171+90-171+|IPR012340+70-171_74-175+|IPR014722+173-280+
|
SM01383+90-171+
|
— | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-381
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.674
|
42466.280
|
10.404
|
34.500
|
22.835
|
10.236
|
44.094
|
55.906
|
16.798
|
6.037
|
52.756
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
30.015
|
66.117
|
19.869
|
14.974
|
12.973
|
12.395
|
55.961
|
55.306
|
28.441
|
20.889
|
24.125
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.964
|
-2.279
|
— | — | — |
2.185
|
2.051
|
— | — | — | — | — | — |
No JSON data available for plots.