Hg_chrom6_TN10mRNA_12911
Organism: Heterodera glycines Gene Locus: chr6:10475234-10475918 Feature type: polypeptideProtein Sequence
Length: 134
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.649 | 1.562 | 0.678 | 0.257 | 0.373 | 1.339 | 0.8 | 0.373 | 1.161 | 0.605 | 0.791 | 3.073 | 1.451 | 0.718 | 0.457 | 1.066 | 1.223 | 1.583 | 0.0 | 0.878 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12159
|
— | — |
2.444
|
2.000
|
4.000
|
1.000
|
2.000
|
2.000
|
3.000
|
3.000
|
3.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
peroxisome
|
— | — | — | — |
5-45
|
0.963
|
— | — |
0.000
|
— | — |
0.179
|
0.388
|
0.270
|
0.371
|
0.041
|
0.152
|
0.016
|
0.487
|
0.292
|
0.472
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004461
|
1.000
|
2.000
|
Hsc_gene_4344.t1;Hsc_gene_4346.t1
|
Hsc_gene_13200.t1;Hsc_gene_4344.t1;Hsc_gene_4346.t1
|
— |
Q3T114.3 2-iminobutanoate/2-iminopropanoate deaminase [Bos taurus]
|
XP_039377130.1 2-iminobutanoate/2-iminopropanoate deaminase [Mauremys reevesii]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.700|GO:0003674_0.679|GO:0005575_0.635|GO:0009987_0.624|GO:0110165_0.620|GO:0016020_0.546|GO:0005622_0.529|GO:0005737_0.529|GO:0003824_0.505|GO:0008152_0.504
|
IPR006056+8-130+|IPR006175+8-131_13-131+|IPR035959+6-132_8-132+
|
— |
PF01042+13-131+Endoribonuclease_L-PSP
|
G3DSA:3.30.1330.40:FF:000001+5-131+L-PSP_family_endoribonuclease
|
PTHR11803+8-131+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-134
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.841
|
14202.310
|
8.901
|
2.500
|
14.179
|
8.955
|
41.045
|
58.955
|
8.209
|
5.970
|
61.194
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
7283.868
|
14.821
|
31.259
|
182.651
|
700.992
|
28243.792
|
193.357
|
37062.516
|
0.000
|
6955.903
|
3974.802
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.847
|
3.485
|
2.654
|
1.910
|
5.346
|
-7.179
|
— |
-7.435
|
-13.565
|
8.370
|
— | — | — |
No JSON data available for plots.