Hg_chrom6_TN10mRNA_12912
Organism: Heterodera glycines Gene Locus: chr6:10488161-10492103 Feature type: polypeptideProtein Sequence
Length: 348
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.501 | 1.136 | 1.411 | 0.595 | 0.623 | 1.032 | 0.445 | 1.868 | 1.916 | 1.32 | 1.045 | 1.69 | 1.357 | 1.326 | 1.349 | 0.862 | 0.612 | 0.74 | 2.653 | 0.423 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12160
|
— | — |
1.222
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.575
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRCKIGEAVFVQQQKKDEK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.537
|
0.343
|
0.074
|
0.457
|
0.184
|
0.076
|
0.066
|
0.044
|
0.364
|
0.218
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000006
|
76.000
|
11.000
|
Hsc_gene_11956.t1;Hsc_gene_11958.t1;Hsc_gene_12023.t1;Hsc_gene_1443.t1;Hsc_gene_17251.t1;Hsc_gene_19549.t1;Hsc_gene_20586.t1;Hsc_gene_24590.t1;Hsc_gene_4483.t1;Hsc_gene_5661.t1;Hsc_gene_9670.t1
|
Hsc_gene_14119.t1
|
— | — |
KAI3421888.1 hypothetical protein GPALN_012431 [Globodera pallida]
|
AKB90631
|
0.360
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
343-348
|
1.000
|
1-342
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.790
|
40681.150
|
9.174
|
13.500
|
28.736
|
13.506
|
47.414
|
52.586
|
17.241
|
11.494
|
43.966
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightgreen
|
24.976
|
21.457
|
26.805
|
15.217
|
11.110
|
6.502
|
16.650
|
42.479
|
23.751
|
38.875
|
32.393
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
-0.702
|
— | — |
1.370
|
2.600
|
-1.207
|
— | — | — | — | — |
No JSON data available for plots.