Hg_chrom6_TN10mRNA_12928
Organism: Heterodera glycines Gene Locus: chr6:10574516-10577823 Feature type: polypeptideProtein Sequence
Length: 350
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.731 | 1.794 | 1.195 | 0.394 | 1.333 | 1.685 | 0.714 | 0.571 | 1.651 | 1.004 | 1.861 | 1.345 | 1.587 | 0.22 | 0.525 | 1.143 | 0.468 | 0.519 | 0.659 | 0.756 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12176
|
— | — |
1.667
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKIVETISALEQEPKQRKA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.436
|
0.070
|
0.013
|
0.591
|
0.255
|
0.225
|
0.111
|
0.007
|
0.100
|
0.332
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000104
|
3.000
|
12.000
|
Hsc_gene_1713.t1;Hsc_gene_17904.t1;Hsc_gene_17904.t2;Hsc_gene_17905.t1;Hsc_gene_17905.t2;Hsc_gene_17907.t1;Hsc_gene_17910.t1;Hsc_gene_17913.t1;Hsc_gene_2159.t1;Hsc_gene_24991.t1;Hsc_gene_5401.t1;Hsc_gene_6839.t1
|
— | — | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
KAG5776358
|
0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR001870+150-344+|IPR003877+218-343_221-339+|IPR013320+164-344+|IPR043136+145-350+|IPR044736+203-339+
|
SM00449+218-343+
|
PF00622+221-339+SPRY_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-111
|
1.000
|
112-350
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.733
|
39880.100
|
7.708
|
3.000
|
30.571
|
10.286
|
55.714
|
44.286
|
16.000
|
14.571
|
43.143
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
red
|
42.813
|
6.862
|
17.285
|
28.172
|
48.856
|
32.735
|
27.244
|
7.299
|
0.000
|
124.137
|
70.936
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.101
|
1.899
|
0.814
|
0.763
|
— | — |
-2.270
|
2.037
|
-7.721
|
5.673
|
— | — | — |
No JSON data available for plots.