Hg_chrom6_TN10mRNA_12935
Organism: Heterodera glycines Gene Locus: chr6:10647490-10649623 Feature type: polypeptideProtein Sequence
Length: 364
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.511 | 1.597 | 1.249 | 0.379 | 0.824 | 0.775 | 0.556 | 1.648 | 1.587 | 1.188 | 1.041 | 0.97 | 1.603 | 1.321 | 1.29 | 1.177 | 0.585 | 0.666 | 2.959 | 0.404 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12183
|
— | — |
1.111
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.569
|
0.323
|
0.048
|
0.420
|
0.162
|
0.046
|
0.059
|
0.021
|
0.300
|
0.212
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000006
|
76.000
|
11.000
|
Hsc_gene_11956.t1;Hsc_gene_11958.t1;Hsc_gene_12023.t1;Hsc_gene_1443.t1;Hsc_gene_17251.t1;Hsc_gene_19549.t1;Hsc_gene_20586.t1;Hsc_gene_24590.t1;Hsc_gene_4483.t1;Hsc_gene_5661.t1;Hsc_gene_9670.t1
|
Hsc_gene_14119.t1
|
— | — |
KAI3411194.1 hypothetical protein GPALN_003277 [Globodera pallida]
|
GAW96952
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
346-364
|
1.000
|
1-345
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.879
|
42248.120
|
9.074
|
11.000
|
28.297
|
14.286
|
50.000
|
50.000
|
16.484
|
11.813
|
46.978
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
blue
|
17.569
|
5.292
|
9.295
|
13.803
|
18.630
|
20.469
|
10.749
|
18.775
|
1.382
|
39.448
|
23.134
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.247
|
— | — | — |
-0.921
|
— | — | — | — | — | — | — |
No JSON data available for plots.