Hg_chrom6_TN10mRNA_12950
Organism: Heterodera glycines Gene Locus: chr6:10740937-10741778 Feature type: polypeptideProtein Sequence
Length: 142
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.228 | 0.164 | 0.768 | 0.243 | 1.761 | 0.903 | 1.258 | 1.761 | 0.626 | 1.047 | 0.96 | 1.657 | 0.782 | 0.813 | 1.581 | 1.408 | 0.577 | 0.96 | 0.0 | 0.414 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12197
|
— | — |
1.222
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
HRAKPRSFHAGLKFPVGRVHRRMKKGPYAK
|
3-27
|
0.980
|
— | — | — | — |
0.000
|
— | — |
0.632
|
0.261
|
0.064
|
0.456
|
0.031
|
0.048
|
0.063
|
0.001
|
0.149
|
0.331
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002358
|
3.000
|
1.000
|
Hsc_gene_3139.t1
|
Hsc_gene_17266.t1;Hsc_gene_3139.t1
|
— |
P69141.2 Histone H2A, embryonic [Strongylocentrotus purpuratus]
|
XP_030837449.1 histone H2A, embryonic-like [Strongylocentrotus purpuratus]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000786|GO:0003677|GO:0030527|GO:0046982
|
GO:0005575_0.852|GO:0110165_0.844|GO:0005622_0.699|GO:0043226_0.699|GO:0016020_0.688|GO:0043229_0.629|GO:0043227_0.612|GO:0008150_0.565|GO:0043231_0.535
|
IPR002119+2-114_5-27_6-105_34-49_49-62_77-89_91-109+|IPR003958+16-78+|IPR009072+1-120_7-103+|IPR032458+13-19+
|
SM00414+2-114+
|
PF00808+16-78+Histone-like_transcription_factor_(CBF/NF-Y)_and_archaeal_histone
|
— |
PTHR23430+6-105+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-20;101-142
|
1.000
|
21-100
|
8gpn_G
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.751
|
15319.200
|
6.982
|
1.500
|
32.394
|
7.746
|
50.000
|
50.000
|
17.606
|
14.789
|
50.704
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
1036.672
|
1.605
|
2.789
|
8.446
|
40.919
|
1034.362
|
15.916
|
1902.956
|
0.000
|
3407.819
|
1947.325
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.256
|
1.721
|
2.244
|
4.672
|
-6.012
|
0.765
|
-6.755
|
-12.535
|
— |
-6.161
|
— | — |
No JSON data available for plots.