Hg_chrom6_TN10mRNA_12957
Organism: Heterodera glycines Gene Locus: chr6:10786682-10793846 Feature type: polypeptideProtein Sequence
Length: 447
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.754 | 0.78 | 0.529 | 1.311 | 0.186 | 0.918 | 0.932 | 1.678 | 1.044 | 1.693 | 0.271 | 0.395 | 2.61 | 1.377 | 1.507 | 0.895 | 0.55 | 1.39 | 1.549 | 0.921 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12204
|
— | — |
1.111
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.948
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
27-67
|
0.939
|
— | — | — | — |
0.000
|
— | — |
0.273
|
0.199
|
0.022
|
0.158
|
0.732
|
0.236
|
0.437
|
0.004
|
0.210
|
0.049
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004462
|
2.000
|
1.000
|
Hsc_gene_11363.t1
|
Hsc_gene_11363.t1
|
— |
Q9C0D9.3 Ethanolaminephosphotransferase 1 [Homo sapiens]
|
KAH7728764.1 Protein F54D7.2 [Aphelenchus avenae]
|
No
|
-0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008654|GO:0016020|GO:0016780
|
GO:0008150_0.901|GO:0009987_0.848|GO:0005575_0.813|GO:0110165_0.808|GO:0003674_0.795|GO:0071944_0.746|GO:0016020_0.744|GO:0005886_0.732|GO:0008152_0.706|GO:0044237_0.689|GO:0044238_0.688|GO:0009058_0.678|GO:0044249_0.662|GO:0006629_0.647|GO:0005622_0.645|GO:0003824_0.644|GO:0008610_0.636|GO:0044255_0.633|GO:0005737_0.619|GO:0043226_0.611|GO:0016740_0.597|GO:0043227_0.596|GO:0043229_0.583|GO:0043231_0.571|GO:0016772_0.555|GO:0005773_0.549|GO:0012505_0.549|GO:0016780_0.548|GO:0006793_0.523|GO:0006796_0.523|GO:0019637_0.511|GO:0046486_0.507|GO:0006644_0.506|GO:0006650_0.506|GO:0090407_0.506|GO:0008654_0.504|GO:0045017_0.503|GO:0046474_0.503
|
IPR000462+111-269+|IPR014472+69-300+|IPR043130+89-301+|IPR048254+174-196+
|
— |
PF01066+111-269+CDP-alcohol_phosphatidyltransferase
|
G3DSA:1.20.120.1760:FF:000016+86-307+ethanolaminephosphotransferase_1
|
PTHR10414+69-300+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-447
|
8erp_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.812
|
50345.140
|
9.833
|
30.500
|
16.555
|
17.897
|
33.110
|
66.890
|
12.528
|
4.027
|
50.336
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1808.643
|
843.653
|
643.573
|
550.201
|
633.143
|
823.827
|
1020.436
|
949.188
|
307.286
|
5633.341
|
3350.746
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.618
|
-0.754
|
— |
0.170
|
0.395
|
0.319
|
— |
0.247
|
— | — | — | — | — |
No JSON data available for plots.