SCN Proteipedia

Hg_chrom6_TN10mRNA_12960

Organism: Heterodera glycines Gene Locus: chr6:10803310-10805727 Feature type: polypeptide

Protein Sequence

Length: 213

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.71	0.764	0.768	0.809	0.313	1.204	1.006	1.174	0.939	1.396	0.285	0.552	2.087	0.993	0.575	1.207	1.001	1.636	2.889	1.381	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_12207	—	—	1.111	1.000	2.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	16-Not_Clustered	0.832

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	endoplasmic_reticulum	—	—	—	—	—	—	—	—	0.002	—	—	0.229	0.185	0.019	0.046	0.801	0.182	0.407	0.004	0.447	0.009

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004462	2.000	1.000	Hsc_gene_11363.t1	Hsc_gene_11363.t1;Hsc_gene_24583.t1	—	Q9C0D9.3 Ethanolaminephosphotransferase 1 [Homo sapiens]	KAH7728764.1 Protein F54D7.2 [Aphelenchus avenae]	No	-0.060

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0008654\|GO:0016020\|GO:0016780	GO:0008150_0.884\|GO:0009987_0.807\|GO:0005575_0.776\|GO:0110165_0.760\|GO:0003674_0.750\|GO:0071944_0.731\|GO:0016020_0.714\|GO:0008152_0.711\|GO:0005886_0.707\|GO:0044237_0.680\|GO:0044238_0.680\|GO:0009058_0.668\|GO:0003824_0.652\|GO:0005622_0.651\|GO:0005737_0.651\|GO:0044249_0.651\|GO:0006629_0.649\|GO:0008610_0.644\|GO:0044255_0.638\|GO:0005773_0.586\|GO:0043226_0.586\|GO:0043227_0.586\|GO:0043229_0.586\|GO:0043231_0.586\|GO:0016740_0.579\|GO:0012505_0.561\|GO:0016772_0.552\|GO:0016780_0.552\|GO:0006793_0.525\|GO:0006796_0.525\|GO:0019637_0.522\|GO:0090407_0.516\|GO:0046486_0.510\|GO:0006644_0.508\|GO:0006650_0.508\|GO:0008654_0.507\|GO:0045017_0.506\|GO:0046474_0.506	IPR000462+52-177+\|IPR014472+10-202+\|IPR043130+30-206+\|IPR048254+115-137+	—	PF01066+52-177+CDP-alcohol_phosphatidyltransferase	—	PTHR10414+10-202+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-213	8erp_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.710	23729.210	6.312	-0.500	13.146	18.310	35.681	64.319	7.042	6.103	54.930

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkred	blue	495.582	168.525	142.347	108.078	121.932	181.050	286.119	215.146	17.916	1696.037	976.842

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.474	-0.778	-0.288	—	0.585	0.669	—	0.553	-4.187	—	—	—	—

No JSON data available for plots.

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