Hg_chrom6_TN10mRNA_12967
Organism: Heterodera glycines Gene Locus: chr6:10836994-10840328 Feature type: polypeptideProtein Sequence
Length: 448
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.675 | 1.35 | 0.446 | 1.155 | 0.967 | 0.859 | 0.824 | 0.893 | 1.538 | 1.297 | 1.218 | 1.444 | 2.17 | 0.987 | 0.729 | 0.925 | 0.842 | 0.879 | 1.03 | 0.722 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12214
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.565
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-23
|
0.937
|
1.000
|
0.000
|
0.000
|
0.212
|
0.230
|
0.129
|
0.340
|
0.234
|
0.067
|
0.119
|
0.065
|
0.234
|
0.748
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002359
|
2.000
|
2.000
|
Hsc_gene_22985.t1;Hsc_gene_22985.t2
|
Hsc_gene_22985.t1;Hsc_gene_22985.t2
|
— |
A0A182C2Z2.1 Ovochymase [Halocynthia roretzi]
|
CAI5786727.1 acrosinacrosin-like [Podarcis lilfordi]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508
|
GO:0005575_0.823|GO:0110165_0.794|GO:0008150_0.786|GO:0003674_0.618|GO:0009987_0.578
|
IPR001254+200-438_201-415_201-448+|IPR001314+233-248_300-314_388-400+|IPR009003+196-417+|IPR033116+389-400+|IPR043504+194-439+|IPR051333+96-419+
|
SM00020+200-438+
|
PF00089+201-415+Trypsin
|
— |
PTHR24260+96-419+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-448
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.881
|
50445.920
|
9.137
|
19.000
|
21.652
|
13.393
|
42.411
|
57.589
|
13.393
|
8.259
|
46.875
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
white
|
8.864
|
0.922
|
0.629
|
6.953
|
1.602
|
24.543
|
3.846
|
53.684
|
4.112
|
1.129
|
2.407
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
3.535
|
-2.131
|
3.925
|
-2.669
|
1.031
|
-3.667
|
— | — | — | — | — |