Hg_chrom6_TN10mRNA_12973
Organism: Heterodera glycines Gene Locus: chr6:10859016-10860752 Feature type: polypeptideProtein Sequence
Length: 491
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.592 | 1.184 | 0.926 | 0.421 | 1.188 | 0.992 | 0.533 | 1.527 | 1.222 | 1.816 | 1.111 | 0.719 | 2.206 | 0.666 | 1.164 | 0.873 | 0.701 | 1.018 | 1.097 | 0.539 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12220
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
KRQK
|
21-54
|
0.972
|
— | — | — | — |
0.000
|
— | — |
0.602
|
0.200
|
0.047
|
0.564
|
0.358
|
0.142
|
0.183
|
0.114
|
0.134
|
0.152
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004228
|
2.000
|
1.000
|
Hsc_gene_6835.t1
|
Hsc_gene_6835.t1
|
— | — |
CAI6344579.1 unnamed protein product [Macrosiphum euphorbiae];CAI6347175.1 unnamed protein product [Macrosiphum euphorbiae];CAI6348869.1 unnamed protein product [Macrosiphum euphorbiae];CAI6360060.1 unnamed protein product [Macrosiphum euphorbiae];CAI6361291.1 unnamed protein product [Macrosiphum euphorbiae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046983
|
— |
IPR008906+400-459+|IPR012337+43-464+
|
— |
PF05699+400-459+hAT_family_C-terminal_dimerisation_region
|
— |
PTHR37162+24-480+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-491
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.644
|
56877.790
|
8.467
|
11.500
|
28.310
|
14.257
|
47.658
|
52.342
|
16.090
|
12.220
|
41.548
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
69.506
|
73.253
|
63.788
|
53.317
|
53.772
|
76.221
|
25.961
|
65.416
|
4.466
|
146.341
|
85.537
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.428
|
-0.596
|
— | — |
0.518
|
-1.545
|
— |
-1.193
|
— |
3.764
|
— | — | — |
No JSON data available for plots.