Hg_chrom6_TN10mRNA_12976
Organism: Heterodera glycines Gene Locus: chr6:10876027-10880139 Feature type: polypeptideProtein Sequence
Length: 324
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.723 | 1.148 | 0.786 | 1.064 | 0.72 | 1.266 | 0.404 | 1.852 | 0.96 | 1.335 | 1.029 | 0.908 | 1.372 | 0.712 | 0.756 | 0.926 | 0.911 | 1.122 | 0.475 | 0.454 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12223
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
KRGRLALTLPKKKSL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.513
|
0.391
|
0.053
|
0.519
|
0.186
|
0.311
|
0.228
|
0.157
|
0.142
|
0.157
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004464
|
2.000
|
1.000
|
Hsc_gene_17267.t1
|
Hsc_gene_17267.t1
|
— |
O17213.2 Protein rogdi homolog [Caenorhabditis elegans]
|
KAI1731823.1 rogdi leucine zipper containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.903|GO:0110165_0.899|GO:0008150_0.738|GO:0009987_0.682|GO:0016020_0.591|GO:0032501_0.562|GO:0071944_0.522|GO:0005886_0.507
|
IPR028241+9-310_26-251+
|
— |
PF10259+26-251+Rogdi_leucine_zipper_containing_protein
|
— |
PTHR13618+9-310+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-8
|
1.000
|
9-324
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.691
|
35320.680
|
8.497
|
12.000
|
22.840
|
10.802
|
44.753
|
55.247
|
14.198
|
8.642
|
53.704
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
turquoise
|
468.300
|
310.701
|
646.377
|
402.623
|
423.663
|
672.687
|
743.013
|
768.026
|
229.886
|
388.737
|
320.658
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.828
|
0.237
|
-0.574
|
— |
0.681
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.