Hg_chrom6_TN10mRNA_12977
Organism: Heterodera glycines Gene Locus: chr6:10880660-10889135 Feature type: polypeptideProtein Sequence
Length: 864
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.265 | 0.861 | 1.199 | 0.359 | 0.81 | 1.395 | 0.827 | 1.968 | 1.209 | 1.361 | 0.316 | 0.817 | 1.511 | 1.113 | 1.63 | 0.777 | 0.721 | 0.947 | 0.979 | 0.306 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12224
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.738
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
golgi_apparatus
|
— | — |
10-41
|
0.985
|
— | — | — | — |
0.000
|
— | — |
0.213
|
0.095
|
0.007
|
0.147
|
0.426
|
0.124
|
0.719
|
0.005
|
0.106
|
0.301
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010853
|
1.000
|
1.000
|
Hsc_gene_17268.t1
|
Hsc_gene_13530.t1;Hsc_gene_17268.t1
|
— |
P45895.1 Chondroitin sulfate synthase mig-22 [Caenorhabditis elegans]
|
KAH7731672.1 CRE-MIG-22 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008376|GO:0032580
|
GO:0003674_0.899|GO:0005575_0.688|GO:0110165_0.680|GO:0016020_0.583|GO:0008150_0.580|GO:0071944_0.568|GO:0005622_0.565|GO:0005886_0.546|GO:0003824_0.523|GO:0009987_0.521|GO:0043226_0.513|GO:0005737_0.510
|
IPR008428+288-856+|IPR051227+70-863+
|
— |
PF05679+288-856+Chondroitin_N-acetylgalactosaminyltransferase
|
— |
PTHR12369+70-863+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-864
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.590
|
95769.580
|
6.755
|
5.000
|
25.463
|
11.690
|
44.444
|
55.556
|
14.005
|
11.458
|
51.042
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
turquoise
|
967.723
|
307.013
|
565.001
|
475.476
|
453.797
|
485.547
|
597.970
|
503.495
|
127.309
|
2867.694
|
1693.243
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.651
|
0.494
|
-0.141
|
— | — |
0.311
|
— |
0.391
|
-4.619
|
— | — | — | — |
No JSON data available for plots.