Hg_chrom6_TN10mRNA_12993
Organism: Heterodera glycines Gene Locus: chr6:10957228-10961513 Feature type: polypeptideProtein Sequence
Length: 232
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.153 | 0.401 | 0.705 | 1.189 | 1.221 | 0.442 | 0.77 | 1.293 | 1.533 | 1.631 | 0.653 | 1.775 | 1.317 | 0.663 | 1.144 | 0.739 | 0.989 | 1.306 | 0.995 | 0.507 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12240
|
— | — |
1.667
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.899
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
lysosome_vacuole
|
— |
PAEKRNK,KRNKRKSKEIEERRRERGGGK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.163
|
0.107
|
0.015
|
0.263
|
0.269
|
0.533
|
0.469
|
0.010
|
0.323
|
0.199
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000604
|
3.000
|
4.000
|
Hsc_gene_13522.t1;Hsc_gene_13522.t2;Hsc_gene_22130.t1;Hsc_gene_22132.t1
|
Hsc_gene_13520.t1;Hsc_gene_13522.t1;Hsc_gene_13522.t2;Hsc_gene_17285.t1;Hsc_gene_22130.t1;Hsc_gene_22131.t1;Hsc_gene_22132.t1
|
— |
Q09614.2 Protein patched homolog 1 [Caenorhabditis elegans]
|
KAH7731674.1 Patched family protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.789|GO:0110165_0.776|GO:0008150_0.759|GO:0071944_0.737|GO:0005886_0.732|GO:0016020_0.732|GO:0009987_0.549|GO:0032501_0.503
|
IPR003392+1-195+|IPR051697+2-223+
|
— |
PF02460+1-195+Patched_family
|
— |
PTHR10796+2-223+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
203-232
|
1.000
|
1-202
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.594
|
25616.080
|
6.480
|
0.000
|
23.707
|
10.345
|
38.362
|
61.638
|
12.500
|
11.207
|
48.707
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
midnightblue
|
297.921
|
302.882
|
175.536
|
222.542
|
159.171
|
196.126
|
59.747
|
306.271
|
137.135
|
667.202
|
440.031
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.015
|
-0.582
|
0.450
|
-0.516
|
0.316
|
-1.704
|
— |
-2.220
|
— | — | — | — | — |
No JSON data available for plots.