Hg_chrom6_TN10mRNA_12997
Organism: Heterodera glycines Gene Locus: chr6:10969889-10972821 Feature type: polypeptideProtein Sequence
Length: 186
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.063 | 0.125 | 0.587 | 1.298 | 1.165 | 0.276 | 0.896 | 1.613 | 1.553 | 1.744 | 0.733 | 1.581 | 1.045 | 0.517 | 1.097 | 0.922 | 1.146 | 1.385 | 0.414 | 0.633 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12243
|
— | — |
1.778
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
3.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
lysosome_vacuole
|
— |
PAEKRNK,KRNKRKSKEMEERRRERGGGK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.154
|
0.194
|
0.020
|
0.217
|
0.261
|
0.516
|
0.469
|
0.009
|
0.479
|
0.226
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000604
|
3.000
|
4.000
|
Hsc_gene_13522.t1;Hsc_gene_13522.t2;Hsc_gene_22130.t1;Hsc_gene_22132.t1
|
Hsc_gene_13520.t1;Hsc_gene_13522.t1;Hsc_gene_13522.t2;Hsc_gene_17285.t1;Hsc_gene_22130.t1;Hsc_gene_22132.t1
|
— |
Q09614.2 Protein patched homolog 1 [Caenorhabditis elegans]
|
KAH7731674.1 Patched family protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.824|GO:0110165_0.817|GO:0008150_0.806|GO:0071944_0.782|GO:0016020_0.780|GO:0005886_0.777|GO:0009987_0.650|GO:0043226_0.515|GO:0032501_0.510
|
IPR003392+2-149+|IPR051697+3-176+
|
— |
PF02460+2-149+Patched_family
|
— |
PTHR10796+3-176+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
157-186
|
1.000
|
1-156
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.509
|
20266.900
|
7.306
|
3.000
|
23.656
|
9.677
|
38.710
|
61.290
|
13.441
|
10.215
|
49.462
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightgreen
|
442.585
|
695.220
|
356.500
|
452.016
|
362.412
|
397.164
|
61.017
|
516.136
|
149.882
|
758.726
|
497.793
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.194
|
-0.758
|
0.452
|
-0.351
|
— |
-2.691
|
— |
-2.941
|
— | — | — | — | — |
No JSON data available for plots.