Hg_chrom6_TN10mRNA_12998
Organism: Heterodera glycines Gene Locus: chr6:10973553-10982131 Feature type: polypeptideProtein Sequence
Length: 555
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.859 | 0.88 | 0.524 | 0.746 | 0.36 | 0.601 | 0.622 | 1.532 | 1.321 | 1.85 | 0.3 | 1.378 | 1.852 | 1.629 | 1.25 | 1.75 | 0.768 | 1.01 | 0.554 | 0.424 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12244
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
lysosome_vacuole
|
— | — | — | — |
39-129
|
0.995
|
— | — |
0.000
|
— | — |
0.146
|
0.053
|
0.010
|
0.115
|
0.284
|
0.580
|
0.404
|
0.041
|
0.471
|
0.079
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002362
|
1.000
|
3.000
|
Hsc_gene_13520.t1;Hsc_gene_17285.t1;Hsc_gene_22131.t1
|
Hsc_gene_13520.t1
|
— |
M0R3Q7.1 Patched domain-containing protein 3 [Rattus norvegicus]
|
KAI6188144.1 Patched-related protein 9 [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.823|GO:0110165_0.823|GO:0071944_0.799|GO:0016020_0.798|GO:0005886_0.797|GO:0008150_0.795|GO:0009987_0.623|GO:0032501_0.556|GO:0043226_0.552|GO:0051179_0.550|GO:0005622_0.544|GO:0006810_0.512|GO:0051234_0.512
|
IPR000731+401-555+|IPR003392+175-551+|IPR051697+143-547+
|
— |
PF02460+175-551+Patched_family
|
— |
PTHR10796+143-547+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-74
|
1.000
|
75-555
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.962
|
60646.900
|
9.907
|
25.500
|
16.216
|
11.892
|
39.279
|
60.721
|
11.171
|
5.045
|
53.514
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
1717.374
|
623.331
|
406.722
|
451.482
|
318.204
|
435.924
|
100.252
|
516.067
|
134.095
|
6343.446
|
3682.295
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.845
|
-0.603
|
0.258
|
-0.536
|
0.469
|
-2.113
|
— |
-2.227
|
-5.691
|
— |
-3.781
|
— | — |
No JSON data available for plots.