Hg_chrom6_TN10mRNA_13000
Organism: Heterodera glycines Gene Locus: chr6:11000425-11008612 Feature type: polypeptideProtein Sequence
Length: 671
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.074 | 0.866 | 0.894 | 0.514 | 1.59 | 1.681 | 0.674 | 2.534 | 0.497 | 0.846 | 1.152 | 1.14 | 0.787 | 1.089 | 1.582 | 0.83 | 1.075 | 0.768 | 0.802 | 0.307 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12246
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.886
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRYPGLVLRRRRPRQ,RRRHKMQQQQQKQRHK,KKRARQQQKEQRKRERE,RREAKLAEREERRRHKM,KKKGRRSLAELKRDKKEAK,KKGRRSLAELKRDKKEAKK,RRSLAELKRDKKEAKKRAR,KKEAKKRARQQQKEQRKRE,KRARQQQKEQRKREREERR,RRRQRKEQRREAKLAEREERRRHK
|
— | — |
19-49
|
0.904
|
— | — |
0.000
|
— | — |
0.927
|
0.110
|
0.021
|
0.302
|
0.066
|
0.020
|
0.038
|
0.011
|
0.083
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010856
|
1.000
|
1.000
|
Hsc_gene_17289.t1
|
Hsc_gene_12017.t1;Hsc_gene_17289.t1
|
— | — |
KAI1725333.1 reticulocyte binding-like protein 2b [Ditylenchus destructor]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-613;668-671
|
1.000
|
614-667
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.707
|
75800.640
|
8.500
|
23.000
|
34.873
|
9.985
|
57.526
|
42.474
|
20.417
|
14.456
|
48.137
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
889.172
|
1128.381
|
633.099
|
396.967
|
365.288
|
668.490
|
506.185
|
355.860
|
1843.254
|
987.333
|
1354.156
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.063
|
-1.644
|
-0.565
|
— |
0.887
|
-0.392
|
-1.015
|
0.649
|
— |
-2.052
|
— | — | — |
No JSON data available for plots.