Hg_chrom6_TN10mRNA_13002
Organism: Heterodera glycines Gene Locus: chr6:11027725-11031190 Feature type: polypeptideProtein Sequence
Length: 417
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.976 | 0.781 | 1.264 | 0.992 | 0.759 | 0.984 | 0.799 | 1.679 | 1.119 | 1.134 | 0.69 | 0.423 | 1.998 | 1.015 | 1.126 | 1.37 | 0.904 | 0.654 | 1.66 | 0.494 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12248
|
— | — |
1.667
|
1.000
|
1.000
|
1.000
|
2.000
|
3.000
|
2.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.528
|
0.147
|
0.009
|
0.603
|
0.101
|
0.117
|
0.050
|
0.048
|
0.100
|
0.057
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002363
|
3.000
|
1.000
|
Hsc_gene_17290.t1
|
Hsc_gene_17295.t1
|
— |
Q91WG4.1 Elongator complex protein 2 [Mus musculus]
|
KAI1725282.1 elongator complex protein 2 [Ditylenchus destructor]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0002098|GO:0005515|GO:0033588
|
GO:0008150_0.812|GO:0005575_0.762|GO:0009987_0.744|GO:0110165_0.672|GO:0005622_0.604|GO:0016020_0.582|GO:0005737_0.565|GO:0043226_0.553|GO:0065007_0.552|GO:0043229_0.546|GO:0050789_0.542|GO:0050794_0.523|GO:0043227_0.520|GO:0043231_0.517
|
IPR001680+82-121_89-120_123-166_259-298_262-293_311-350_318-351_319-349+|IPR015943+1-248_249-402+|IPR036322+3-351+|IPR037289+9-232+
|
SM00320+82-121_123-166_259-298_311-350+
|
PF00400+89-120_262-293_319-349+WD_domain,_G-beta_repeat
|
— |
PTHR44111+9-232+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-417
|
8avg_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.695
|
46420.250
|
6.606
|
1.000
|
24.940
|
14.388
|
47.242
|
52.758
|
13.429
|
11.511
|
52.998
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
677.304
|
414.568
|
335.935
|
320.426
|
272.065
|
226.150
|
249.642
|
359.683
|
148.070
|
2035.226
|
1226.445
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.534
|
-0.509
|
— |
-0.268
|
-0.252
|
— |
0.564
|
-0.384
|
-3.899
|
— |
-2.419
|
— | — |
No JSON data available for plots.