Hg_chrom6_TN10mRNA_13003
Organism: Heterodera glycines Gene Locus: chr6:11032991-11035801 Feature type: polypeptideProtein Sequence
Length: 339
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.789 | 0.755 | 1.073 | 1.831 | 0.639 | 0.983 | 0.913 | 1.917 | 1.442 | 1.036 | 0.849 | 0.868 | 1.639 | 0.908 | 1.324 | 0.927 | 1.064 | 0.805 | 1.361 | 0.347 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12249
|
— | — |
1.222
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.983
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKIRERFCSAVDTKKEKS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.588
|
0.217
|
0.043
|
0.424
|
0.087
|
0.119
|
0.064
|
0.090
|
0.118
|
0.083
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002363
|
3.000
|
1.000
|
Hsc_gene_17290.t1
|
Hsc_gene_17297.t1
|
— |
Q7K4B3.1 Elongator complex protein 2 [Drosophila melanogaster]
|
EFA10370.2 putative elongator complex protein 2-like Protein [Tribolium castaneum]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0002098|GO:0005515|GO:0033588
|
GO:0008150_0.792|GO:0005575_0.730|GO:0009987_0.729|GO:0110165_0.641|GO:0005622_0.525|GO:0016020_0.525|GO:0065007_0.523|GO:0050789_0.519
|
IPR001680+194-233_201-232+|IPR015943+27-249+|IPR036322+46-261+|IPR037289+148-237+
|
SM00320+194-233+
|
PF00400+201-232+WD_domain,_G-beta_repeat
|
— |
PTHR44111+148-237+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-339
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.821
|
37827.470
|
8.323
|
14.500
|
25.664
|
12.684
|
45.723
|
54.277
|
15.929
|
9.735
|
51.917
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
747.386
|
114.180
|
77.286
|
52.905
|
46.537
|
39.037
|
56.448
|
80.510
|
32.734
|
3070.176
|
1768.415
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.793
|
-1.247
|
-0.438
|
— | — |
0.541
|
0.936
|
— | — | — |
-3.901
|
— | — |
No JSON data available for plots.