Hg_chrom6_TN10mRNA_13004
Organism: Heterodera glycines Gene Locus: chr6:11035959-11038509 Feature type: polypeptideProtein Sequence
Length: 203
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.088 | 0.916 | 0.627 | 1.359 | 1.642 | 0.758 | 0.704 | 1.478 | 1.204 | 0.932 | 0.672 | 1.449 | 1.232 | 1.042 | 1.307 | 0.915 | 1.292 | 0.373 | 0.758 | 1.304 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12250
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.047
|
0.953
|
0.034
|
0.099
|
0.046
|
0.034
|
0.055
|
0.045
|
0.070
|
0.026
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010857
|
1.000
|
1.000
|
Hsc_gene_24089.t1
|
Hsc_gene_17293.t1;Hsc_gene_24089.t1
|
— |
Q22619.1 Probable NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial [Caenorhabditis elegans]
|
XP_003139042.1 NADH-ubiquinone oxidoreductase 23 kDa subunit [Loa loa];EFO25025.1 NADH-ubiquinone oxidoreductase 23 kDa subunit [Loa loa]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0016651|GO:0051539
|
GO:0005575_0.866|GO:0110165_0.863|GO:0005622_0.774|GO:0016020_0.736|GO:0005737_0.727|GO:0043226_0.694|GO:0043229_0.669|GO:0043227_0.657|GO:0043231_0.650|GO:0008150_0.539
|
IPR010226+45-203_51-187_62-181+|IPR017896+95-124_103-157_134-163+|IPR017900+143-154+
|
— |
PF12838+103-157+4Fe-4S_dicluster_domain
|
G3DSA:3.30.70.3270:FF:000001+77-200+NADH-quinone_oxidoreductase_subunit_I_1
|
PTHR10849+45-203+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-203
|
8xo0_I
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.499
|
22918.830
|
5.942
|
-2.000
|
27.094
|
12.808
|
48.276
|
51.724
|
13.793
|
13.300
|
48.768
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1348.702
|
444.059
|
854.010
|
1140.088
|
1582.624
|
1193.647
|
1240.526
|
1001.045
|
1263.804
|
2156.716
|
1774.040
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.714
|
1.223
|
0.525
|
0.441
|
-0.392
|
— |
-0.362
|
0.454
|
— | — | — | — | — |
No JSON data available for plots.