Hg_chrom6_TN10mRNA_13012
Organism: Heterodera glycines Gene Locus: chr6:11125072-11127433 Feature type: polypeptideProtein Sequence
Length: 267
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.653 | 1.132 | 1.226 | 0.775 | 0.749 | 1.056 | 1.115 | 1.498 | 1.581 | 0.759 | 0.851 | 1.542 | 2.185 | 0.648 | 0.764 | 1.338 | 1.044 | 0.794 | 0.864 | 0.441 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12258
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.726
|
0.117
|
0.009
|
0.536
|
0.240
|
0.143
|
0.135
|
0.014
|
0.117
|
0.395
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
P18160.3 Dual specificity protein kinase splA [Dictyostelium discoideum]
|
KAI3419176.1 Ran-binding protein 9 [Globodera pallida]
|
XP_007754645
|
0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.931|GO:0009987_0.665|GO:0008152_0.607|GO:0065007_0.583|GO:0005575_0.580|GO:0110165_0.578|GO:0044238_0.577|GO:0050789_0.565|GO:0050794_0.553|GO:0048519_0.514|GO:0019222_0.512|GO:0005622_0.507|GO:0048523_0.505|GO:0080090_0.504
|
IPR001870+55-253+|IPR003877+123-252_127-250+|IPR013320+70-252+|IPR043136+54-260+|IPR044736+108-249+|IPR050618+60-249+
|
SM00449+123-252+
|
PF00622+127-250+SPRY_domain
|
— |
PTHR12864+60-249+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-7
|
1.000
|
8-267
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.732
|
29450.180
|
6.291
|
-1.000
|
23.596
|
13.483
|
48.315
|
51.685
|
12.360
|
11.236
|
53.184
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
333.925
|
16.722
|
26.782
|
16.710
|
13.438
|
37.408
|
233.592
|
13.743
|
0.000
|
1326.522
|
758.012
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
-0.570
|
— |
1.489
|
2.650
|
-1.555
|
4.228
|
-8.271
|
4.919
|
— | — | — |
No JSON data available for plots.