Hg_chrom6_TN10mRNA_13018
Organism: Heterodera glycines Gene Locus: chr6:11162880-11164170 Feature type: polypeptideProtein Sequence
Length: 333
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.454 | 1.467 | 1.365 | 0.828 | 0.701 | 0.847 | 0.501 | 1.351 | 1.668 | 1.177 | 1.092 | 1.413 | 1.919 | 1.04 | 1.471 | 1.03 | 0.837 | 0.455 | 2.772 | 0.353 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12264
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.935
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRCKIIGEKEEKQKKD
|
— | — | — | — | — | — |
0.000
|
— | — |
0.546
|
0.313
|
0.049
|
0.440
|
0.163
|
0.052
|
0.085
|
0.048
|
0.335
|
0.242
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000006
|
76.000
|
11.000
|
Hsc_gene_11956.t1;Hsc_gene_11958.t1;Hsc_gene_12023.t1;Hsc_gene_1443.t1;Hsc_gene_17251.t1;Hsc_gene_19549.t1;Hsc_gene_20586.t1;Hsc_gene_24590.t1;Hsc_gene_4483.t1;Hsc_gene_5661.t1;Hsc_gene_9670.t1
|
Hsc_gene_20720.t1
|
— | — |
KAI3411074.1 hypothetical protein GPALN_003159 [Globodera pallida]
|
MEA2639492
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-333
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.859
|
39095.840
|
9.265
|
13.500
|
28.829
|
14.414
|
50.751
|
49.249
|
17.117
|
11.712
|
45.045
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
red
|
52.905
|
4.420
|
7.731
|
15.703
|
32.277
|
43.685
|
15.717
|
35.276
|
0.000
|
173.406
|
99.089
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.690
|
1.132
|
1.008
|
0.451
|
-1.465
|
— |
-1.022
|
— |
4.830
|
— | — | — |
No JSON data available for plots.