Hg_chrom6_TN10mRNA_13021
Organism: Heterodera glycines Gene Locus: chr6:11184800-11185361 Feature type: polypeptideProtein Sequence
Length: 138
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.59 | 2.022 | 0.527 | 0.5 | 0.845 | 0.557 | 0.863 | 1.087 | 1.449 | 0.294 | 2.306 | 0.853 | 2.214 | 0.557 | 0.887 | 1.139 | 1.069 | 0.988 | 0.557 | 0.853 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12267
|
— | — |
1.222
|
1.000
|
— |
2.000
|
1.000
|
2.000
|
2.000
|
— |
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
EKPKQKIKDAKKRTRPNFQKRAEAKNISKSA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.881
|
0.172
|
0.015
|
0.443
|
0.045
|
0.008
|
0.015
|
0.004
|
0.021
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003215
|
3.000
|
0.000
|
0.000
|
— | — | — |
UYV73211.1 DAZAP1 [Cordylochernes scorpioides];UYV73212.1 DAZAP1 [Cordylochernes scorpioides]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0005575_0.850|GO:0110165_0.843|GO:0005622_0.795|GO:0008150_0.757|GO:0043226_0.735|GO:0043229_0.728|GO:0003674_0.719|GO:0005488_0.681|GO:0016020_0.668|GO:0043227_0.657|GO:0043231_0.657|GO:0009987_0.649|GO:0097159_0.627|GO:0003676_0.620|GO:0003723_0.583|GO:0005634_0.543|GO:0008152_0.507|GO:0009058_0.507|GO:0043170_0.503|GO:0005737_0.502|GO:0009059_0.501|GO:0044237_0.501|GO:0044249_0.501
|
IPR000504+1-72_1-87_2-53+|IPR012677+1-73+|IPR035979+2-86+
|
SM00360+1-72+
|
PF00076+2-53+RNA_recognition_motif
|
— |
PTHR48033+1-93+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
73-138
|
1.000
|
1-72
|
9en7_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.524
|
15676.990
|
10.731
|
17.500
|
29.710
|
13.768
|
55.072
|
44.928
|
21.739
|
7.971
|
49.275
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.198
|
0.000
|
0.000
|
0.436
|
0.491
|
0.490
|
0.202
|
0.687
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.