Hg_chrom6_TN10mRNA_13029
Organism: Heterodera glycines Gene Locus: chr6:11299145-11300191 Feature type: polypeptideProtein Sequence
Length: 154
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.906 | 1.057 | 0.708 | 0.672 | 0.974 | 1.166 | 0.773 | 0.974 | 2.02 | 0.79 | 0.394 | 1.146 | 1.263 | 0.874 | 1.06 | 1.577 | 1.065 | 0.492 | 1.499 | 1.91 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12275
|
— | — |
1.111
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
4.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — |
45-83
|
0.927
|
— | — |
0.000
|
— | — |
0.549
|
0.464
|
0.044
|
0.527
|
0.091
|
0.072
|
0.098
|
0.204
|
0.108
|
0.338
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000175
|
1.000
|
11.000
|
Hsc_gene_10876.t1;Hsc_gene_10876.t2;Hsc_gene_10876.t3;Hsc_gene_10876.t4;Hsc_gene_10878.t1;Hsc_gene_19297.t1;Hsc_gene_19300.t1;Hsc_gene_19301.t1;Hsc_gene_9812.t1;Hsc_gene_9812.t2;Hsc_gene_9814.t1
|
Hsc_gene_19301.t1
|
— | — |
KAI3410971.1 hypothetical protein GPALN_003055 [Globodera pallida]
|
XP_021601364
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-154
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.717
|
17356.470
|
5.632
|
-1.500
|
19.481
|
14.935
|
46.104
|
53.896
|
9.740
|
9.740
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
white
|
266.296
|
5.747
|
0.157
|
103.546
|
803.881
|
1644.210
|
441.832
|
64.190
|
0.000
|
16.207
|
9.261
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-5.510
|
4.036
|
9.578
|
2.925
|
1.047
|
-1.886
|
-4.806
|
2.933
|
— |
7.551
|
5.494
|
— | — |
No JSON data available for plots.