Hg_chrom6_TN10mRNA_13030
Organism: Heterodera glycines Gene Locus: chr6:11302762-11318320 Feature type: polypeptideProtein Sequence
Length: 906
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.744 | 1.463 | 1.084 | 0.723 | 1.177 | 0.736 | 0.67 | 0.993 | 1.128 | 0.88 | 1.171 | 2.532 | 1.41 | 0.828 | 1.014 | 0.946 | 0.905 | 0.819 | 2.123 | 1.006 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12276
|
— | — |
1.111
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
KRAR,RLKKRRI
|
— | — | — | — | — | — |
0.000
|
— | — |
0.207
|
0.200
|
0.040
|
0.446
|
0.228
|
0.180
|
0.165
|
0.024
|
0.346
|
0.588
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002364
|
1.000
|
3.000
|
Hsc_gene_10879.t1;Hsc_gene_14730.t1;Hsc_gene_15503.t1
|
Hsc_gene_10879.t1;Hsc_gene_19293.t2;Hsc_gene_9809.t1
|
— |
Q9JLT2.1 Trehalase [Mus musculus]
|
KAI3414146.1 Trehalase [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004555|GO:0005975|GO:0005991|GO:0006508|GO:0008234
|
GO:0008150_0.778|GO:0005575_0.775|GO:0110165_0.774|GO:0003674_0.726|GO:0003824_0.590|GO:0016020_0.586|GO:0008152_0.565|GO:0016787_0.522|GO:0044238_0.510|GO:0005622_0.503
|
IPR000169+669-680+|IPR000668+646-896_646-903+|IPR001661+20-584_49-569_217-235_285-302_320-337_359-376_470-486_553-566+|IPR008928+29-576+|IPR012341+25-588+|IPR038765+638-896+
|
SM00645+646-903+
|
PF00112+646-896+Papain_family_cysteine_protease|PF01204+49-569+Trehalase
|
— |
PTHR23403+20-584+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
899-906
|
1.000
|
1-898
|
2ipp_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.696
|
104199.680
|
7.062
|
6.000
|
27.704
|
13.245
|
49.007
|
50.993
|
14.680
|
13.024
|
48.234
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
828.856
|
33.983
|
18.788
|
26.213
|
243.922
|
538.984
|
139.826
|
891.888
|
19.440
|
2901.562
|
1666.367
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.087
|
-0.511
|
0.591
|
3.187
|
1.158
|
-1.936
|
0.618
|
-2.529
|
-3.880
|
— | — | — | — |
No JSON data available for plots.