Hg_chrom6_TN10mRNA_13031
Organism: Heterodera glycines Gene Locus: chr6:11329098-11332350 Feature type: polypeptideProtein Sequence
Length: 361
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.612 | 1.804 | 1.41 | 1.242 | 0.646 | 0.426 | 0.956 | 1.662 | 1.477 | 1.123 | 0.881 | 0.652 | 2.001 | 0.693 | 0.735 | 1.068 | 0.681 | 0.797 | 2.131 | 0.815 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12277
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.468
|
0.236
|
0.019
|
0.595
|
0.328
|
0.270
|
0.047
|
0.062
|
0.069
|
0.168
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000432
|
1.000
|
7.000
|
Hsc_gene_22993.t1;Hsc_gene_22993.t2;Hsc_gene_22993.t3;Hsc_gene_22993.t4;Hsc_gene_999.t1;Hsc_gene_999.t2;Hsc_gene_999.t3
|
— | — | — |
KAI3408116.1 Ran-binding protein 9 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.717|GO:0005575_0.590|GO:0110165_0.585
|
IPR001870+205-361+|IPR003877+273-357+|IPR013320+36-209_225-358+|IPR043136+39-217_218-360+|IPR044736+84-205_257-357+|IPR050618+258-357+
|
— |
PF00622+273-357+SPRY_domain
|
— |
PTHR12864+258-357+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-361
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.709
|
40694.980
|
6.219
|
-2.000
|
24.377
|
16.066
|
45.429
|
54.571
|
12.742
|
11.634
|
52.909
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
405.024
|
1.390
|
2.963
|
4.924
|
2.578
|
4.176
|
10.837
|
2.062
|
11.690
|
1752.364
|
1006.361
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.694
|
— | — | — |
1.381
|
— |
2.529
|
-5.137
|
— |
-8.812
|
— | — |
No JSON data available for plots.