Hg_chrom6_TN10mRNA_13032
Organism: Heterodera glycines Gene Locus: chr6:11332995-11334628 Feature type: polypeptideProtein Sequence
Length: 371
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.878 | 1.191 | 0.931 | 0.744 | 1.123 | 0.76 | 0.578 | 1.617 | 1.258 | 1.166 | 1.552 | 1.268 | 1.872 | 0.829 | 0.88 | 1.155 | 0.707 | 0.531 | 0.415 | 1.11 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12278
|
— | — |
0.778
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.949
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.821
|
0.166
|
0.023
|
0.244
|
0.093
|
0.043
|
0.065
|
0.004
|
0.082
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000865
|
3.000
|
3.000
|
Hsc_gene_23603.t1;Hsc_gene_5223.t1;Hsc_gene_5223.t2
|
— | — | — |
KIH53449.1 dimerization domain protein, hAT family [Ancylostoma duodenale]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.945|GO:0005575_0.924|GO:0110165_0.924|GO:0009987_0.895|GO:0003674_0.872|GO:0005622_0.862|GO:0016020_0.854|GO:0043226_0.823|GO:0043229_0.815|GO:0065007_0.810|GO:0050789_0.793|GO:0008152_0.783|GO:0005488_0.779|GO:0005737_0.778|GO:0043227_0.778|GO:0050794_0.777|GO:0044238_0.776|GO:0009058_0.773|GO:0044237_0.767|GO:0043231_0.765|GO:0043170_0.760|GO:0044249_0.750|GO:0009059_0.738|GO:0005515_0.733|GO:0006139_0.730|GO:0071944_0.729|GO:0003824_0.728|GO:0010467_0.727|GO:0048518_0.721|GO:0019222_0.719|GO:0019538_0.719|GO:0048522_0.716|GO:0005886_0.715|GO:0031323_0.715|GO:0034654_0.715|GO:0090304_0.715|GO:0060255_0.711|GO:0080090_0.708|GO:0141187_0.704|GO:0097159_0.703|GO:0016070_0.702|GO:0009889_0.701|GO:0031326_0.701|GO:0010468_0.699|GO:0010556_0.699|GO:0032774_0.699|GO:0009893_0.696|GO:0009891_0.691|GO:0031325_0.691|GO:0043412_0.691|GO:0036211_0.690|GO:0044419_0.690|GO:0010604_0.689|GO:0019219_0.689|GO:0031328_0.687|GO:0010557_0.685|GO:0006351_0.684|GO:0051252_0.684|GO:0003676_0.682|GO:0016740_0.682|GO:0006355_0.681|GO:2001141_0.681|GO:0006366_0.680|GO:0045935_0.680|GO:0006357_0.678|GO:0051254_0.678|GO:0043687_0.677|GO:0045893_0.677|GO:0070647_0.677|GO:1902680_0.677|GO:0032446_0.676|GO:0140096_0.676|GO:0016032_0.674|GO:0018193_0.674|GO:0019058_0.674|GO:0044403_0.674|GO:0045944_0.674|GO:0016925_0.670|GO:0018205_0.670|GO:0019079_0.670|GO:0044788_0.670|GO:0044793_0.670|GO:0044827_0.670|GO:0044828_0.670|GO:0051702_0.670|GO:0051851_0.670|GO:1990466_0.670|GO:0042802_0.667|GO:0016746_0.662|GO:0003677_0.659|GO:0060090_0.658|GO:0016755_0.657|GO:0019787_0.657|GO:0043565_0.657|GO:0003690_0.656|GO:0061659_0.656|GO:0001067_0.655|GO:0030674_0.655|GO:1990837_0.655|GO:0000976_0.654|GO:0140110_0.654|GO:0000785_0.650|GO:0000977_0.650|GO:0000978_0.650|GO:0000981_0.650|GO:0000987_0.650|GO:0001216_0.650|GO:0001228_0.650|GO:0003700_0.650|GO:0003712_0.650|GO:0003713_0.650|GO:0005694_0.650|GO:0019789_0.650|GO:0043228_0.650|GO:0043232_0.650|GO:0061665_0.650|GO:0005634_0.639|GO:0005773_0.616|GO:0012505_0.605|GO:0031974_0.589|GO:0043233_0.589|GO:0070013_0.589|GO:0031981_0.584|GO:0031090_0.581|GO:0005856_0.569|GO:0005654_0.563|GO:0031967_0.561|GO:0015630_0.556|GO:0005635_0.550|GO:0005815_0.550|GO:0005813_0.546|GO:0005814_0.546|GO:0016604_0.540|GO:0016605_0.540|GO:0031965_0.540
|
IPR012337+189-318+|IPR052717+36-319+
|
— | — | — |
PTHR46169+36-319+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
54-122
|
2.000
|
1-53;123-371
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.842
|
42323.470
|
9.184
|
16.000
|
29.650
|
14.286
|
50.135
|
49.865
|
17.790
|
11.860
|
45.013
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
63.657
|
189.305
|
132.024
|
97.385
|
54.638
|
29.787
|
11.963
|
78.399
|
55.751
|
14.123
|
31.963
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.749
|
-1.096
|
-0.331
|
-0.866
|
-0.861
|
-1.309
|
1.295
|
-2.575
|
— | — | — | — | — |
No JSON data available for plots.