Hg_chrom6_TN10mRNA_13033
Organism: Heterodera glycines Gene Locus: chr6:11338841-11341738 Feature type: polypeptideProtein Sequence
Length: 583
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.997 | 1.237 | 1.06 | 0.651 | 0.972 | 2.639 | 0.49 | 1.458 | 0.534 | 1.159 | 0.728 | 1.614 | 0.905 | 1.155 | 1.365 | 0.98 | 1.125 | 0.676 | 1.056 | 0.353 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12279
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.974
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.273
|
0.231
|
0.041
|
0.539
|
0.175
|
0.087
|
0.306
|
0.098
|
0.474
|
0.182
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001130
|
4.000
|
1.000
|
Hsc_gene_17184.t1
|
— | — |
P29309.1 14-3-3-like protein [Xenopus laevis]
|
XP_061674665.1 14-3-3 protein zeta-like [Syngnathoides biaculeatus]
|
No
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.911|GO:0005575_0.905|GO:0110165_0.902|GO:0009987_0.863|GO:0005622_0.795|GO:0065007_0.794|GO:0003674_0.759|GO:0016020_0.749|GO:0050789_0.747|GO:0005488_0.742|GO:0043226_0.694|GO:0050794_0.659|GO:0005515_0.631|GO:0005737_0.619|GO:0043229_0.578|GO:0043227_0.573|GO:0051179_0.555|GO:0071944_0.539|GO:0005886_0.525|GO:0050896_0.508
|
IPR000308+417-575_429-453_460-482_494-520_521-547+|IPR023410+371-583_413-573+|IPR036815+376-582_408-573+
|
SM00101+371-583+
|
PF00244+413-573+14-3-3_protein
|
— |
PTHR18860+417-575+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-271
|
1.000
|
272-583
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.688
|
65888.750
|
7.346
|
7.500
|
26.072
|
8.748
|
55.403
|
44.597
|
14.408
|
11.664
|
49.914
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
darkred
|
262.408
|
53.566
|
24.428
|
30.581
|
263.680
|
669.574
|
435.187
|
410.680
|
0.000
|
440.150
|
251.514
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.369
|
-0.946
|
— |
3.076
|
1.359
|
-0.610
|
-0.818
|
— |
-9.596
|
5.792
|
— | — | — |
No JSON data available for plots.