Hg_chrom6_TN10mRNA_13035
Organism: Heterodera glycines Gene Locus: chr6:11351116-11358497 Feature type: polypeptideProtein Sequence
Length: 333
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.943 | 1.257 | 0.655 | 2.589 | 0.951 | 1.309 | 0.679 | 1.802 | 0.934 | 0.852 | 1.001 | 3.356 | 1.335 | 0.693 | 0.245 | 1.115 | 0.935 | 0.91 | 0.924 | 0.618 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12281
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-19
|
0.924
|
0.999
|
0.000
|
0.000
|
0.161
|
0.168
|
0.057
|
0.281
|
0.254
|
0.358
|
0.414
|
0.015
|
0.209
|
0.949
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004469
|
1.000
|
2.000
|
Hsc_gene_10875.t1;Hsc_gene_9824.t1
|
— | — | — |
XP_024504193.1 Phospholipase A2 domain-containing protein [Strongyloides ratti];CEF64992.1 Phospholipase A2 domain-containing protein [Strongyloides ratti]
|
XP_025377571
|
0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004623|GO:0006644|GO:0050482
|
GO:0005575_0.626|GO:0008150_0.626|GO:0110165_0.619|GO:0003674_0.558
|
IPR033113+123-130+|IPR036444+116-173+|IPR053322+77-184+
|
— | — | — |
PTHR34228+77-184+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-333
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.606
|
36784.450
|
6.596
|
1.000
|
20.721
|
11.712
|
44.745
|
55.255
|
11.411
|
9.309
|
53.453
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
98.769
|
20.608
|
9.453
|
6.495
|
7.976
|
256.847
|
22.917
|
359.188
|
12.953
|
166.094
|
100.462
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.356
|
-1.803
|
— | — |
5.030
|
-3.478
|
— |
-3.827
|
— | — |
-4.144
|
— | — |