Hg_chrom6_TN10mRNA_13037
Organism: Heterodera glycines Gene Locus: chr6:11379523-11381843 Feature type: polypeptideProtein Sequence
Length: 197
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.708 | 1.653 | 0.738 | 0.7 | 1.184 | 1.041 | 0.967 | 1.523 | 1.241 | 1.784 | 0.538 | 1.194 | 1.41 | 0.781 | 1.243 | 0.653 | 0.915 | 0.538 | 1.562 | 0.896 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12283
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.773
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.713
|
0.151
|
0.020
|
0.491
|
0.208
|
0.228
|
0.171
|
0.003
|
0.084
|
0.134
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004470
|
2.000
|
1.000
|
Hsc_gene_9827.t1
|
Hsc_gene_10873.t1;Hsc_gene_9827.t1
|
— |
Q9CR30.1 Josephin-2 [Mus musculus]
|
KAF7639523.1 Josephin domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004843|GO:0016579
|
GO:0005575_0.808|GO:0110165_0.799|GO:0008150_0.774|GO:0005622_0.733|GO:0003674_0.708|GO:0005737_0.703|GO:0008152_0.634|GO:0044238_0.612|GO:0043170_0.588|GO:0019538_0.564|GO:0043412_0.532|GO:0036211_0.531|GO:0016020_0.514|GO:0003824_0.508
|
IPR006155+14-189_21-177_22-173+|IPR040053+9-179+
|
SM01246+21-177+
|
PF02099+22-173+Josephin
|
— |
PTHR13291+9-179+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
187-197
|
1.000
|
1-186
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.653
|
22415.550
|
6.486
|
0.000
|
23.858
|
13.198
|
45.178
|
54.822
|
12.690
|
11.168
|
45.178
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
342.206
|
205.162
|
177.616
|
147.322
|
180.221
|
171.589
|
427.234
|
265.651
|
87.880
|
840.696
|
518.060
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.440
|
-0.615
|
— |
0.258
|
— |
1.328
|
0.529
|
0.828
|
— | — | — | — | — |
No JSON data available for plots.