SCN Proteipedia

Hg_chrom6_TN10mRNA_13041

Organism: Heterodera glycines Gene Locus: chr6:11397999-11399852 Feature type: polypeptide

Protein Sequence

Length: 193

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.542	0.602	0.942	0.0	1.295	0.93	1.049	0.777	1.036	1.54	1.57	0.914	1.007	0.598	2.855	0.592	0.17	1.413	0.399	0.61	0.0

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Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_12287	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	5-pJ2_J3_J4	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	KRLFEGNALLRRLVR,RKRARELLTLEDKDPKR,GGRPGRVKRKNAKKGAGG,KREVWRVKLSLAKIRKRAR	44-64	0.994	—	—	—	—	0.000	—	—	0.441	0.168	0.087	0.562	0.259	0.105	0.073	0.004	0.092	0.113

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010865	1.000	1.000	Hsc_gene_10949.t1	Hsc_gene_10949.t1;Hsc_gene_584.t1;Hsc_gene_9828.t1	—	A6QLG5.1 Small ribosomal subunit protein uS4 [Bos taurus]	KAI1725657.1 s4 domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003723\|GO:0003735\|GO:0006412\|GO:0015935\|GO:0019843	GO:0005575_0.920\|GO:0110165_0.917\|GO:0005622_0.858\|GO:0043226_0.819\|GO:0043229_0.779\|GO:0005737_0.733\|GO:0043228_0.661\|GO:0043232_0.658\|GO:0016020_0.642\|GO:0043227_0.598\|GO:0003674_0.596\|GO:0005829_0.551\|GO:0032991_0.535\|GO:0043231_0.528\|GO:0008150_0.505	IPR001912+6-107_10-107+\|IPR002942+108-151_108-172+\|IPR005710+6-165+\|IPR018079+106-130+\|IPR022801+8-186+\|IPR036986+107-176+	SM00363+108-172+\|SM01390+6-107+	PF00163+10-107+Ribosomal_protein_S4/S9_N-terminal_domain\|PF01479+108-151+S4_domain	G3DSA:3.10.290.10:FF:000004+107-164+40s_ribosomal_protein_s9	PTHR11831+8-186+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	163-193	1.000	1-162	9h4n_L3	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.788	22411.220	11.336	23.500	38.860	7.772	50.259	49.741	25.907	12.953	38.860

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	purple	9647.953	6342.088	6974.172	14844.858	16085.032	13964.060	7244.247	4099.094	6908.434	10945.889	9215.551

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.092	1.090	1.198	—	—	-0.937	-1.877	0.966	—	—	—	—	—

No JSON data available for plots.

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