Hg_chrom6_TN10mRNA_13042
Organism: Heterodera glycines Gene Locus: chr6:11400365-11401362 Feature type: polypeptideProtein Sequence
Length: 202
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.691 | 0.691 | 1.44 | 0.341 | 1.155 | 1.523 | 0.53 | 0.743 | 1.54 | 1.271 | 1.05 | 0.874 | 1.925 | 0.857 | 1.515 | 1.202 | 0.893 | 0.375 | 0.381 | 0.874 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12288
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.816
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RKLKADLDMPQGRRGKD
|
— | — | — | — | — | — |
0.000
|
— | — |
0.348
|
0.283
|
0.009
|
0.649
|
0.123
|
0.165
|
0.125
|
0.015
|
0.113
|
0.276
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010866
|
1.000
|
1.000
|
Hsc_gene_9829.t1
|
Hsc_gene_1807.t1;Hsc_gene_9829.t1
|
— |
O02365.1 Intermediate filament protein ifa-2 [Caenorhabditis elegans]
|
AAN46118.1 intermediate filament protein HG-IF1 [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.912|GO:0110165_0.907|GO:0005622_0.790|GO:0043226_0.744|GO:0043229_0.722|GO:0008150_0.665|GO:0016020_0.626|GO:0009987_0.589|GO:0043227_0.522|GO:0043228_0.505|GO:0043232_0.502
|
IPR039008+15-107_15-202+
|
— |
PF00038+15-107+Intermediate_filament_protein
|
G3DSA:1.20.5.1160:FF:000023+8-109+Intermediate_filament_protein_ifa-1
|
PTHR45721+7-107+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-19
|
1.000
|
20-202
|
3ssu_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.595
|
23326.380
|
6.724
|
0.500
|
30.693
|
11.881
|
53.465
|
46.535
|
15.842
|
14.851
|
43.069
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
312.172
|
297.130
|
256.556
|
369.802
|
385.211
|
387.950
|
292.692
|
359.886
|
238.469
|
305.941
|
277.024
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.441
|
0.179
|
0.636
|
— | — |
-0.396
|
— | — | — | — | — | — | — |
No JSON data available for plots.