Hg_chrom6_TN10mRNA_13046
Organism: Heterodera glycines Gene Locus: chr6:11417390-11417829 Feature type: polypeptideProtein Sequence
Length: 115
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.416 | 1.416 | 0.791 | 0.3 | 1.159 | 1.338 | 1.346 | 2.174 | 0.386 | 1.058 | 1.054 | 1.535 | 0.725 | 0.669 | 1.242 | 0.497 | 0.713 | 1.186 | 0.0 | 0.512 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12291
|
— | — |
0.778
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.752
|
0.620
|
0.271
|
0.532
|
0.045
|
0.014
|
0.030
|
0.015
|
0.047
|
0.082
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010868
|
1.000
|
1.000
|
Hsc_gene_12007.t1
|
Hsc_gene_12007.t1
|
— | — |
MDA8261608.1 Fic family protein [Actinomycetota bacterium]
|
MDX1912227
|
0.390
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.909|GO:0005575_0.891|GO:0110165_0.872|GO:0003674_0.847|GO:0050896_0.770|GO:0016020_0.757|GO:0006950_0.714|GO:0003824_0.683|GO:0016740_0.659|GO:0016772_0.650|GO:0016779_0.650|GO:0070566_0.650|GO:0070733_0.650|GO:0071944_0.642|GO:0009987_0.624|GO:0005622_0.623|GO:0005886_0.618|GO:0005488_0.616|GO:0043226_0.571|GO:0008152_0.565|GO:0005737_0.562|GO:0005515_0.552|GO:0043229_0.544|GO:0044238_0.536|GO:0043170_0.532|GO:0051716_0.520|GO:0043227_0.516|GO:0043231_0.516
|
IPR003812+1-93_18-51+|IPR036597+1-100_17-101+
|
— |
PF02661+18-51+Fic/DOC_family
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-30;89-115
|
1.000
|
31-88
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.846
|
12378.930
|
9.011
|
4.500
|
28.696
|
8.696
|
47.826
|
52.174
|
17.391
|
11.304
|
53.913
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
96.635
|
156.441
|
134.773
|
101.559
|
86.344
|
112.341
|
51.131
|
193.290
|
106.219
|
29.661
|
62.472
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.444
|
-0.760
|
-0.300
|
-0.267
|
0.395
|
-1.126
|
0.680
|
-1.777
|
— | — | — | — | — |
No JSON data available for plots.