Hg_chrom6_TN10mRNA_13047
Organism: Heterodera glycines Gene Locus: chr6:11417831-11419614 Feature type: polypeptideProtein Sequence
Length: 158
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.736 | 1.178 | 0.921 | 0.873 | 0.527 | 0.487 | 0.527 | 1.899 | 0.563 | 1.54 | 0.959 | 1.117 | 2.813 | 0.365 | 2.067 | 0.995 | 0.623 | 1.343 | 0.974 | 0.745 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12292
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|golgi_apparatus
|
— |
RRRDFSVEEYRKKAF
|
5-25
|
0.997
|
— | — | — | — |
0.001
|
— | — |
0.184
|
0.086
|
0.035
|
0.208
|
0.639
|
0.185
|
0.659
|
0.036
|
0.115
|
0.487
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001377
|
4.000
|
1.000
|
Hsc_gene_12003.t1
|
Hsc_gene_12003.t1;Hsc_gene_12005.t1
|
— |
P34548.1 Xylosylprotein 4-beta-galactosyltransferase [Caenorhabditis elegans]
|
XP_024506376.1 Beta-1,4-galactosyltransferase 7 [Strongyloides ratti];CEF67176.1 Beta-1,4-galactosyltransferase 7 [Strongyloides ratti]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005975|GO:0016757
|
GO:0008150_0.897|GO:0009987_0.767|GO:0005575_0.720|GO:0110165_0.720|GO:0003674_0.704|GO:0008152_0.670|GO:0044237_0.626|GO:0009058_0.625|GO:0016020_0.623|GO:0044249_0.614|GO:1901135_0.588|GO:0044238_0.582|GO:1901137_0.577|GO:0003824_0.561|GO:0071944_0.548|GO:0005886_0.534|GO:0016740_0.533|GO:0016757_0.519|GO:0016758_0.518|GO:0043170_0.513|GO:0005622_0.507
|
IPR003859+37-116_41-62_63-81+|IPR027791+41-107+|IPR029044+21-145_41-104+
|
— |
PF02709+41-107+N-terminal_domain_of_galactosyltransferase
|
— |
PTHR19300+37-116+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-158
|
4lw6_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.603
|
18514.560
|
10.720
|
16.000
|
28.481
|
17.722
|
46.203
|
53.797
|
20.253
|
8.228
|
44.937
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.