Hg_chrom6_TN10mRNA_13053
Organism: Heterodera glycines Gene Locus: chr6:11437788-11445558 Feature type: polypeptideProtein Sequence
Length: 783
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.921 | 0.772 | 1.045 | 0.44 | 0.404 | 1.212 | 0.608 | 2.107 | 1.306 | 2.037 | 0.31 | 0.676 | 1.809 | 0.982 | 1.173 | 1.46 | 0.9 | 0.832 | 0.589 | 0.526 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12297
|
— | — |
0.778
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
8-48
|
0.975
|
— | — | — | — |
0.000
|
— | — |
0.089
|
0.173
|
0.007
|
0.187
|
0.610
|
0.449
|
0.437
|
0.055
|
0.336
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004471
|
1.000
|
2.000
|
Hsc_gene_10946.t1;Hsc_gene_9834.t1
|
Hsc_gene_9834.t1
|
— |
Q4R7S2.2 Sodium/hydrogen exchanger 9B1 [Macaca fascicularis]
|
KAI1732159.1 sodium/hydrogen exchanger family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.973|GO:0005575_0.956|GO:0110165_0.956|GO:0009987_0.945|GO:0016020_0.940|GO:0071944_0.931|GO:0005886_0.928|GO:0051179_0.785|GO:0051234_0.775|GO:0006810_0.772|GO:0003674_0.598|GO:0005622_0.596|GO:0043226_0.587|GO:0055085_0.576|GO:0043229_0.563|GO:0043227_0.555|GO:0006811_0.531|GO:0034220_0.524|GO:0005215_0.520|GO:0022857_0.520|GO:0005737_0.518
|
IPR038770+243-590+|IPR051843+245-575+
|
— | — | — |
PTHR31102+245-575+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2;117-235;713-783
|
2.000
|
3-116;236-712
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.721
|
86790.730
|
7.350
|
13.500
|
20.179
|
13.282
|
43.934
|
56.066
|
12.005
|
8.174
|
49.681
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
brown
|
126.948
|
169.335
|
176.625
|
75.223
|
103.715
|
237.998
|
189.877
|
399.958
|
28.114
|
27.037
|
27.498
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.308
|
-1.124
|
0.431
|
1.213
|
-0.318
|
0.644
|
-0.934
|
— | — | — | — | — |
No JSON data available for plots.