Hg_chrom6_TN10mRNA_13056
Organism: Heterodera glycines Gene Locus: chr6:11470054-11474832 Feature type: polypeptideProtein Sequence
Length: 436
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.387 | 0.64 | 0.626 | 1.265 | 0.879 | 0.941 | 0.573 | 1.72 | 0.714 | 1.178 | 0.452 | 0.809 | 1.402 | 1.059 | 1.123 | 2.031 | 1.241 | 0.695 | 0.176 | 0.607 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12300
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — |
38-59
|
0.990
|
— | — | — | — |
0.000
|
— | — |
0.061
|
0.065
|
0.024
|
0.120
|
0.347
|
0.212
|
0.544
|
0.013
|
0.253
|
0.755
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004472
|
1.000
|
2.000
|
Hsc_gene_1820.t1;Hsc_gene_1820.t2
|
— | — |
Q22687.2 Interleukin cytokine-related protein 17.1 [Caenorhabditis elegans]
|
KAI1725664.1 interleukin-17 domain-containing protein [Ditylenchus destructor]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005125|GO:0005576
|
GO:0008150_0.956|GO:0005575_0.924|GO:0110165_0.923|GO:0065007_0.907|GO:0050789_0.895|GO:0050896_0.828|GO:0048518_0.793|GO:0009628_0.699|GO:0040011_0.682|GO:0040012_0.678|GO:0040017_0.677|GO:0070482_0.675|GO:0005576_0.605
|
IPR010345+332-405+|IPR029034+294-410_312-407+
|
— |
PF06083+332-405+Interleukin-17
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-436
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.827
|
46762.520
|
7.259
|
6.500
|
20.642
|
10.780
|
48.853
|
51.147
|
11.927
|
8.716
|
58.486
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
1265.375
|
333.911
|
752.050
|
168.583
|
122.284
|
49.704
|
38.342
|
241.803
|
3.792
|
4893.169
|
2797.722
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.941
|
-1.123
|
-2.048
|
-0.494
|
-1.285
|
— |
2.182
|
-2.515
|
-8.782
|
5.735
|
-3.453
|
— | — |
No JSON data available for plots.