Hg_chrom6_TN10mRNA_13058
Organism: Heterodera glycines Gene Locus: chr6:11485713-11489966 Feature type: polypeptideProtein Sequence
Length: 380
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.224 | 1.346 | 0.574 | 0.454 | 1.842 | 0.742 | 0.752 | 1.579 | 0.994 | 1.387 | 0.877 | 1.238 | 0.877 | 0.607 | 1.289 | 0.94 | 0.82 | 0.758 | 1.417 | 0.619 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12302
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— | — |
67-91
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.353
|
0.352
|
0.016
|
0.233
|
0.684
|
0.182
|
0.280
|
0.012
|
0.153
|
0.049
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010870
|
1.000
|
1.000
|
Hsc_gene_1817.t1
|
— | — |
Q6DFJ8.1 Endoplasmic reticulum junction formation protein lunapark [Xenopus laevis]
|
KAI1725691.1 putative integral membrane zinc-ribbon metal-binding protein domain-containing protein [Ditylenchus destructor]
|
No
|
-0.800
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0071786
|
GO:0008150_0.958|GO:0009987_0.918|GO:0005575_0.711|GO:0110165_0.711|GO:0016020_0.653|GO:0071840_0.644|GO:0016043_0.637|GO:0005886_0.631|GO:0071944_0.631|GO:0005622_0.612|GO:0065007_0.604|GO:0050789_0.586|GO:0043226_0.573|GO:0003674_0.572|GO:0050794_0.565|GO:0043229_0.540|GO:0005737_0.526|GO:0043227_0.517|GO:0043231_0.501
|
IPR019273+273-322+|IPR040115+40-374+
|
— |
PF10058+273-322+Predicted_integral_membrane_zinc-ribbon_metal-binding_protein
|
— |
PTHR22166+40-374+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
330-380
|
1.000
|
1-329
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.534
|
42592.120
|
6.243
|
-2.000
|
29.474
|
10.263
|
49.737
|
50.263
|
15.263
|
14.211
|
46.842
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
lightgreen
|
384.577
|
325.674
|
289.988
|
409.741
|
482.323
|
396.141
|
517.225
|
215.377
|
263.902
|
495.922
|
396.485
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.395
|
0.194
|
0.606
|
0.204
|
-0.270
|
0.396
|
-0.985
|
1.408
|
— | — | — | — | — |
No JSON data available for plots.