Hg_chrom6_TN10mRNA_13059
Organism: Heterodera glycines Gene Locus: chr6:11490125-11493226 Feature type: polypeptideProtein Sequence
Length: 295
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.631 | 1.34 | 0.924 | 0.584 | 0.847 | 0.869 | 0.605 | 2.203 | 1.281 | 1.466 | 0.873 | 1.595 | 1.13 | 1.173 | 1.522 | 0.775 | 0.722 | 0.924 | 1.304 | 1.097 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12303
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.767
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
GRKPWPQKKMGRH,RRILEYIHKAGVHNRKYRY
|
— | — | — | — | — | — |
0.000
|
— | — |
0.075
|
0.967
|
0.011
|
0.220
|
0.046
|
0.019
|
0.042
|
0.005
|
0.045
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010871
|
1.000
|
1.000
|
Hsc_gene_1816.t2
|
Hsc_gene_1816.t1;Hsc_gene_1816.t2
|
— |
Q9DCU6.1 Large ribosomal subunit protein uL4m [Mus musculus]
|
KAI1725690.1 ribosomal protein l4/L1 family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.823|GO:0110165_0.812|GO:0005622_0.772|GO:0016020_0.719|GO:0005737_0.712|GO:0043226_0.693|GO:0043229_0.685|GO:0043227_0.630|GO:0043231_0.611|GO:0003674_0.521
|
IPR002136+62-255+|IPR013005+39-257+|IPR023574+32-276_51-256+
|
— |
PF00573+62-255+Ribosomal_protein_L4/L1_family
|
G3DSA:3.40.1370.10:FF:000005+29-276+39S_ribosomal_protein_L4,_mitochondrial
|
PTHR10746+39-257+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-295
|
9uwh_F
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.853
|
34135.380
|
9.561
|
15.500
|
27.797
|
13.898
|
46.780
|
53.220
|
17.627
|
10.169
|
45.085
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
greenyellow
|
883.092
|
484.868
|
578.575
|
813.659
|
1017.940
|
767.209
|
994.812
|
630.029
|
752.607
|
1316.414
|
1074.782
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.609
|
0.601
|
0.291
|
-0.393
|
0.386
|
-0.390
|
0.802
|
— | — | — | — | — |
No JSON data available for plots.