SCN Proteipedia

Hg_chrom6_TN10mRNA_13064

Organism: Heterodera glycines Gene Locus: chr6:11512134-11521494 Feature type: polypeptide

Protein Sequence

Length: 551

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.519	1.266	0.594	0.814	0.847	0.931	0.821	1.361	0.726	0.956	0.605	1.601	1.16	1.152	1.037	1.452	0.774	0.99	0.419	0.961	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_12308	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Not_Clustered	0.947

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.844	0.150	0.013	0.336	0.031	0.064	0.072	0.014	0.142	0.057

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010872	1.000	1.000	Hsc_gene_1812.t1	Hsc_gene_1812.t1;Hsc_gene_1812.t2	—	Q93705.3 Transcription factor unc-3 [Caenorhabditis elegans]	KAI1725675.1 transcription factor COE1 DNA-binding domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0003677\|GO:0006355	GO:0008150_0.874\|GO:0009987_0.825\|GO:0065007_0.797\|GO:0050789_0.785\|GO:0050794_0.774\|GO:0005575_0.773\|GO:0110165_0.765\|GO:0008152_0.714\|GO:0043170_0.714\|GO:0003674_0.711\|GO:0044237_0.706\|GO:0044238_0.705\|GO:0009058_0.702\|GO:0019222_0.701\|GO:0031323_0.699\|GO:0080090_0.692\|GO:0060255_0.691\|GO:0048518_0.689\|GO:0009059_0.688\|GO:0044249_0.688\|GO:0010467_0.686\|GO:0048522_0.682\|GO:0009889_0.680\|GO:0005622_0.676\|GO:0006139_0.676\|GO:0010468_0.671\|GO:0010556_0.671\|GO:0031326_0.671\|GO:0034654_0.671\|GO:0005488_0.669\|GO:0016070_0.666\|GO:0032774_0.666\|GO:0090304_0.666\|GO:0141187_0.666\|GO:0019219_0.656\|GO:0051252_0.656\|GO:0009893_0.653\|GO:0031325_0.652\|GO:0006351_0.646\|GO:0006355_0.646\|GO:2001141_0.646\|GO:0010604_0.643\|GO:0009891_0.640\|GO:0031328_0.640\|GO:0043226_0.637\|GO:0043229_0.636\|GO:0010557_0.633\|GO:0045935_0.626\|GO:0051254_0.623\|GO:0045893_0.615\|GO:1902680_0.615\|GO:0006357_0.539\|GO:0006366_0.539\|GO:0045944_0.521\|GO:0097159_0.516	IPR002909+325-392+\|IPR003523+35-508+\|IPR013783+319-409+\|IPR014756+324-409+\|IPR018350+183-192+\|IPR032200+61-268_67-268+\|IPR032201+411-454+\|IPR038173+27-273+	—	PF01833+325-392+IPT/TIG_domain\|PF16422+61-268+Transcription_factor_COE1_DNA-binding_domain\|PF16423+411-454+Transcription_factor_COE1_helix-loop-helix_domain	G3DSA:2.60.40.3180:FF:000007+41-268+Transcription_factor_unc-3	PTHR10747+35-508+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	253-308	2.000	1-252;309-551	3lyr_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.890	59144.800	8.054	11.500	20.145	10.708	44.102	55.898	11.797	8.348	58.439

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	628.993	2198.346	2061.508	640.727	121.524	129.108	85.577	958.158	128.776	332.158	244.994

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.320	-1.916	-1.579	-2.429	—	-0.583	2.795	-3.345	—	—	—	—	—

No JSON data available for plots.

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