Hg_chrom6_TN10mRNA_13066
Organism: Heterodera glycines Gene Locus: chr6:11546401-11562052 Feature type: polypeptideProtein Sequence
Length: 1,102
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.886 | 1.118 | 1.122 | 0.563 | 0.62 | 1.28 | 0.605 | 1.588 | 1.633 | 1.263 | 0.564 | 1.495 | 1.764 | 0.96 | 1.093 | 1.089 | 0.863 | 0.825 | 1.396 | 0.881 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12310
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — |
11-32
|
0.988
|
— | — | — | — |
0.000
|
— | — |
0.086
|
0.089
|
0.004
|
0.126
|
0.438
|
0.652
|
0.473
|
0.011
|
0.619
|
0.076
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004475
|
1.000
|
2.000
|
Hsc_gene_1806.t1;Hsc_gene_1806.t2
|
Hsc_gene_1804.t1;Hsc_gene_1806.t1;Hsc_gene_1806.t2
|
— |
Q3KNS1.4 Patched domain-containing protein 3 [Homo sapiens]
|
KAI1732170.1 patched family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.834|GO:0110165_0.829|GO:0016020_0.784|GO:0008150_0.775|GO:0071944_0.766|GO:0005886_0.756|GO:0009987_0.594|GO:0043226_0.557|GO:0005622_0.551|GO:0043229_0.512|GO:0051179_0.509
|
IPR000731+288-423+|IPR003392+51-1067+|IPR051697+6-1087+
|
— |
PF02460+51-1067+Patched_family
|
G3DSA:1.20.1640.10:FF:000013+875-1070+PaTched_Related_family
|
PTHR10796+6-1087+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
437-689
|
2.000
|
1-436;690-1102
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.653
|
124898.820
|
6.924
|
8.500
|
22.142
|
14.338
|
44.828
|
55.172
|
12.250
|
9.891
|
48.639
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
blue
|
1163.433
|
395.047
|
123.971
|
86.215
|
728.907
|
841.118
|
212.891
|
245.890
|
28.441
|
4080.922
|
2344.144
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.900
|
-2.333
|
-0.417
|
3.048
|
— |
-1.973
|
-1.887
|
— |
-7.290
|
— | — | — | — |
No JSON data available for plots.