Hg_chrom6_TN10mRNA_13068
Organism: Heterodera glycines Gene Locus: chr6:11562681-11571099 Feature type: polypeptideProtein Sequence
Length: 652
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.141 | 0.856 | 0.948 | 0.529 | 1.048 | 1.612 | 0.712 | 1.534 | 0.648 | 0.953 | 1.069 | 1.804 | 1.065 | 0.944 | 1.033 | 1.358 | 0.88 | 0.86 | 1.652 | 0.451 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12312
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.770
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — |
54-111
|
0.977
|
— | — |
0.000
|
— | — |
0.329
|
0.194
|
0.024
|
0.677
|
0.194
|
0.206
|
0.155
|
0.026
|
0.354
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010875
|
1.000
|
1.000
|
Hsc_gene_1803.t1
|
Hsc_gene_1803.t1
|
— |
Q11090.3 Putative serine/threonine-protein kinase C01C4.3 [Caenorhabditis elegans]
|
KAI1732169.1 protein kinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.797|GO:0009987_0.674|GO:0003674_0.661|GO:0005575_0.637|GO:0110165_0.630|GO:0065007_0.555|GO:0005622_0.546|GO:0050789_0.541|GO:0003824_0.519|GO:0016020_0.503
|
IPR000719+314-585_315-576+|IPR011009+310-582+
|
— |
PF00069+315-576+Protein_kinase_domain
|
— |
PTHR24359+259-619+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-289;646-652
|
1.000
|
290-645
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.786
|
72425.630
|
8.197
|
14.000
|
26.687
|
10.583
|
51.534
|
48.466
|
15.184
|
11.503
|
51.687
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
1307.895
|
255.077
|
1376.976
|
823.413
|
301.341
|
98.914
|
126.353
|
665.060
|
604.627
|
3900.896
|
2488.209
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.204
|
1.553
|
-0.634
|
-1.482
|
-1.592
|
0.363
|
2.648
|
-2.256
|
-2.805
|
— |
-3.480
|
— | — |
No JSON data available for plots.