Hg_chrom6_TN10mRNA_13069
Organism: Heterodera glycines Gene Locus: chr6:11575411-11579505 Feature type: polypeptideProtein Sequence
Length: 438
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.717 | 1.115 | 0.83 | 1.26 | 0.875 | 0.761 | 1.142 | 0.913 | 1.167 | 1.08 | 0.692 | 1.477 | 1.395 | 1.098 | 1.351 | 1.5 | 0.823 | 0.761 | 1.054 | 0.47 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12313
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
43-63
|
0.965
|
7-32
|
0.983
|
— | — |
0.000
|
— | — |
0.251
|
0.115
|
0.031
|
0.183
|
0.274
|
0.452
|
0.376
|
0.008
|
0.546
|
0.149
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002366
|
1.000
|
3.000
|
Hsc_gene_1802.t1;Hsc_gene_1802.t2;Hsc_gene_1802.t3
|
Hsc_gene_1802.t1;Hsc_gene_1802.t2
|
— | — |
NP_001257183.1 Transmembrane protein 196 [Caenorhabditis elegans];CAA91528.3 Transmembrane protein 196 [Caenorhabditis elegans]
|
No
|
0.440
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
383-438
|
1.000
|
1-382
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.941
|
47849.400
|
8.183
|
10.000
|
22.831
|
9.817
|
46.119
|
53.881
|
13.014
|
9.817
|
55.023
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
355.217
|
296.192
|
991.734
|
346.404
|
187.889
|
127.071
|
91.555
|
657.501
|
484.071
|
179.142
|
309.826
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.515
|
— |
-1.410
|
-0.915
|
-0.550
|
-0.462
|
2.269
|
-2.702
|
— | — | — | — | — |
No JSON data available for plots.