Hg_chrom6_TN10mRNA_13070
Organism: Heterodera glycines Gene Locus: chr6:11580092-11581107 Feature type: polypeptideProtein Sequence
Length: 111
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.733 | 1.048 | 0.491 | 0.621 | 0.901 | 0.462 | 1.073 | 0.901 | 1.602 | 1.217 | 1.502 | 2.65 | 0.25 | 0.52 | 1.103 | 1.673 | 1.034 | 0.683 | 0.0 | 1.325 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12314
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — |
33-58
|
0.989
|
— | — | — | — |
0.000
|
— | — |
0.530
|
0.300
|
0.046
|
0.560
|
0.162
|
0.115
|
0.162
|
0.001
|
0.121
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001381
|
3.000
|
2.000
|
Hsc_gene_1799.t1;Hsc_gene_26303.t1
|
Hsc_gene_1799.t1;Hsc_gene_26303.t1;Hsc_gene_7980.t1
|
— |
P58375.1 Large ribosomal subunit protein eL30 [Spodoptera frugiperda]
|
KAH7719822.1 60S ribosomal protein L30 [Aphelenchus avenae]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0003735|GO:0022625
|
GO:0005575_0.927|GO:0110165_0.921|GO:0005622_0.772|GO:0005737_0.686|GO:0043226_0.617|GO:0043229_0.600|GO:0003674_0.582|GO:0005488_0.526|GO:0008150_0.515
|
IPR000231+11-108+|IPR004038+12-104+|IPR022991+23-47_79-99+|IPR029064+1-107_11-105+|IPR039109+1-109+
|
— |
PF01248+12-104+Ribosomal_protein_L7Ae/L30e/S12e/Gadd45_family
|
G3DSA:3.30.1330.30:FF:000001+1-107+60S_ribosomal_protein_L30
|
PTHR11449+1-109+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;108-111
|
1.000
|
2-107
|
4v6w_Cc
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.796
|
12143.080
|
10.202
|
9.000
|
25.225
|
7.207
|
49.550
|
50.450
|
17.117
|
8.108
|
49.550
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
5550.059
|
2302.484
|
3929.273
|
6490.217
|
7154.591
|
7115.860
|
4350.242
|
2629.803
|
3631.880
|
8817.920
|
6595.332
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.543
|
1.358
|
0.832
|
0.108
|
— |
-0.699
|
-1.544
|
0.871
|
-1.394
|
— | — | — | — |
No JSON data available for plots.