Hg_chrom6_TN10mRNA_13072
Organism: Heterodera glycines Gene Locus: chr6:11585774-11590934 Feature type: polypeptideProtein Sequence
Length: 336
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.623 | 1.453 | 0.92 | 0.513 | 1.389 | 1.374 | 0.248 | 1.488 | 1.455 | 1.528 | 1.037 | 1.576 | 1.653 | 0.63 | 1.518 | 0.808 | 0.634 | 0.902 | 0.229 | 0.963 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12316
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.718
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.408
|
0.137
|
0.009
|
0.619
|
0.180
|
0.369
|
0.293
|
0.035
|
0.296
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010877
|
1.000
|
1.000
|
Hsc_gene_1797.t1
|
Hsc_gene_1797.t1
|
— |
P91891.2 Protein Mo25 [Drosophila melanogaster]
|
KAI1707902.1 mo25-like domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.811|GO:0110165_0.808|GO:0005622_0.787|GO:0008150_0.726|GO:0005737_0.688|GO:0009987_0.681|GO:0043226_0.564|GO:0016020_0.559|GO:0043229_0.553
|
IPR011989+4-334+|IPR013878+6-334_6-335+|IPR016024+12-335+
|
— |
PF08569+6-334+Mo25-like
|
G3DSA:1.25.10.10:FF:000025+4-334+Calcium-binding_protein_39
|
PTHR10182+6-335+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-336
|
3zhp_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.580
|
39625.630
|
8.329
|
8.000
|
30.655
|
12.500
|
51.786
|
48.214
|
17.262
|
13.393
|
38.988
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
885.624
|
672.895
|
579.391
|
551.631
|
663.300
|
808.225
|
1138.419
|
922.768
|
282.203
|
1661.715
|
1070.496
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.445
|
-0.424
|
— |
0.235
|
0.299
|
0.505
|
— |
0.445
|
— | — | — | — | — |
No JSON data available for plots.